Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   G3257_RS20960 Genome accession   NZ_CP048832
Coordinates   4692813..4694189 (-) Length   458 a.a.
NCBI ID   WP_034779363.1    Uniprot ID   A0AAJ4T447
Organism   Janthinobacterium lividum strain EIF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4687813..4699189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3257_RS20935 (G3257_20895) rraA 4687954..4688448 (-) 495 WP_034779352.1 ribonuclease E activity regulator RraA -
  G3257_RS20940 (G3257_20900) - 4688481..4689731 (-) 1251 WP_244965269.1 MFS transporter -
  G3257_RS20945 (G3257_20905) - 4689832..4690632 (+) 801 WP_070282210.1 helix-turn-helix transcriptional regulator -
  G3257_RS20950 (G3257_20910) fliD 4690745..4692130 (-) 1386 WP_176376132.1 flagellar filament capping protein FliD -
  G3257_RS20955 (G3257_20915) - 4692361..4692681 (-) 321 WP_071653418.1 PilZ domain-containing protein -
  G3257_RS20960 (G3257_20920) radA 4692813..4694189 (-) 1377 WP_034779363.1 DNA repair protein RadA Machinery gene
  G3257_RS20965 (G3257_20925) alr 4694259..4695356 (-) 1098 WP_034779366.1 alanine racemase -
  G3257_RS20970 (G3257_20930) lplT 4695605..4696867 (+) 1263 WP_034779369.1 lysophospholipid transporter LplT -
  G3257_RS20975 (G3257_20935) - 4696943..4697890 (-) 948 WP_244965489.1 DUF1853 family protein -
  G3257_RS20980 (G3257_20940) - 4697874..4698749 (-) 876 WP_176376133.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49046.65 Da        Isoelectric Point: 7.2144

>NTDB_id=423380 G3257_RS20960 WP_034779363.1 4692813..4694189(-) (radA) [Janthinobacterium lividum strain EIF1]
MAKVKTIYTCSDCGAISNKWMGQCTSCNQWNTMVETLPETGGNNRYSNPQHMSLAQTAPVLSLDDIDAIDVPRFGTGIEE
FDRVLGGGMVAGGVVLIGGDPGIGKSTLLLQALANMSHHKRVLYVSGEESGAQIALRAKRLVIDAKELKLQAEIQLEKIL
ATLNDLKPEVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRAAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDAHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSHL
PNARRLSVGLEQNRLAMLLAVAHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLA
GEIRPAPRGQERLREAAKLGFTLAVVPKSNLPKQVIEGLKVIGVERIDEAFNKLRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=423380 G3257_RS20960 WP_034779363.1 4692813..4694189(-) (radA) [Janthinobacterium lividum strain EIF1]
ATGGCAAAAGTCAAGACCATCTACACCTGCAGCGATTGCGGCGCCATCAGCAACAAATGGATGGGGCAATGCACCTCGTG
CAACCAGTGGAACACCATGGTGGAAACCCTGCCCGAGACGGGCGGCAACAACCGCTATTCGAATCCGCAGCACATGTCGC
TGGCGCAGACGGCGCCCGTGCTGTCGCTCGATGATATCGACGCCATCGACGTGCCCCGCTTCGGCACGGGCATCGAGGAA
TTCGACCGCGTGCTGGGCGGCGGCATGGTGGCGGGCGGCGTCGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCGAC
CCTGCTGCTGCAGGCGCTGGCCAACATGTCGCACCACAAGCGCGTGCTGTACGTCAGTGGCGAGGAATCGGGCGCGCAGA
TCGCCCTGCGCGCCAAGCGCCTCGTCATCGACGCCAAGGAACTCAAACTGCAGGCCGAGATCCAGCTGGAAAAGATCCTG
GCCACCTTGAACGACCTGAAGCCGGAAGTGGTGGTGATCGACTCGATCCAGACCGTGTATTCGGACGCGCTCAGCTCGGC
GCCCGGTTCCGTGGCGCAAGTGCGCGAATGCGCGGCCCAGCTGACGCGCGCGGCCAAGCAGACGGGCGTGACCATCATTT
TAGTCGGCCACGTGACGAAAGAGGGCGCGCTGGCCGGTCCCCGCGTGCTCGAACACATCGTCGACACGGTGCTGTATTTC
GAGGGTGACGCGCACTCCAGCTTCCGCCTCGTGCGCGCCATCAAGAACCGTTTCGGCGCCGTCAATGAGCTGGGCGTGTT
CGCCATGACGGAAAAGGGCCTGAAGGGAGTATCGAATCCGTCCGCCCTGTTCCTGTCGCAGCACGACAATCAGGTGCCCG
GTTCCTGTGTGATGGTGACGCAGGAGGGCACGCGTCCGTTGTTGGTGGAAATCCAGGCCCTCGTTGACACGAGCCACTTG
CCCAACGCGCGCCGGCTGTCCGTCGGCCTGGAGCAGAATCGCCTGGCCATGCTGCTGGCCGTGGCGCACCGCCATGCGGG
CATCGCCGCCTTCGACCAGGATGTGTTCATCAACGCCGTCGGCGGTGTCAAAATTACGGAACCGGCGGCCGACCTGGCCG
TGTTGCTGGCGATTAACTCGTCGATGCGCAACAAGCCCTTGCCGCGGGGACTCGTGGTGTTTGGCGAGGTGGGGCTGGCC
GGTGAGATCCGCCCCGCGCCACGGGGCCAGGAGCGCTTGCGCGAAGCGGCCAAGCTGGGCTTTACCCTGGCCGTCGTGCC
GAAGTCGAACTTGCCCAAGCAAGTCATCGAAGGCCTCAAGGTCATCGGCGTGGAGCGTATCGACGAAGCGTTTAACAAGT
TGCGGGACCTGGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(78-222)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-452)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.366

100

0.485
  radA Streptococcus pneumoniae Rx1

47.826

100

0.48
  radA Streptococcus pneumoniae D39

47.826

100

0.48
  radA Streptococcus pneumoniae R6

47.826

100

0.48
  radA Streptococcus pneumoniae TIGR4

47.826

100

0.48
  radA Streptococcus mitis NCTC 12261

47.609

100

0.478
  radA Streptococcus mitis SK321

47.609

100

0.478

Multiple sequence alignment