Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   G3257_RS18230 Genome accession   NZ_CP048832
Coordinates   4082819..4085254 (-) Length   811 a.a.
NCBI ID   WP_176375864.1    Uniprot ID   -
Organism   Janthinobacterium lividum strain EIF1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4077819..4090254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3257_RS18200 (G3257_18165) dcd 4078134..4078703 (-) 570 WP_034755486.1 dCTP deaminase -
  G3257_RS18205 (G3257_18170) - 4078837..4079637 (-) 801 WP_034784409.1 alpha/beta hydrolase -
  G3257_RS18210 (G3257_18175) - 4079696..4080391 (-) 696 WP_176375862.1 HAD family phosphatase -
  G3257_RS18215 (G3257_18180) - 4080413..4081174 (-) 762 WP_034756294.1 TSUP family transporter -
  G3257_RS18220 (G3257_18185) - 4081326..4082249 (+) 924 WP_034784406.1 LysR family transcriptional regulator -
  G3257_RS18225 (G3257_18190) - 4082253..4082774 (-) 522 WP_176375863.1 N-acetyltransferase -
  G3257_RS18230 (G3257_18195) comA 4082819..4085254 (-) 2436 WP_176375864.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  G3257_RS18235 (G3257_18200) - 4085439..4086272 (+) 834 WP_176375865.1 class I SAM-dependent methyltransferase -
  G3257_RS18240 (G3257_18205) - 4086358..4088343 (+) 1986 WP_034788531.1 helicase-related protein -
  G3257_RS18245 (G3257_18210) - 4088347..4088820 (-) 474 WP_034788574.1 T6SS effector amidase Tae4 family protein -
  G3257_RS18250 (G3257_18215) - 4088915..4090156 (-) 1242 WP_034788533.1 PQQ-dependent sugar dehydrogenase -

Sequence

Protein


Download         Length: 811 a.a.        Molecular weight: 87427.01 Da        Isoelectric Point: 10.1073

>NTDB_id=423379 G3257_RS18230 WP_176375864.1 4082819..4085254(-) (comA) [Janthinobacterium lividum strain EIF1]
MRTLILGFAAGAAWLQTQASLPPYGGVLLWVTAGVSLLAALLLCRHARWRSCLHSTVALAAGVGLGFYWAAWLAQAAMAP
QLALADEGQDIVVTGTVASLPYRFEQGVRFNFAVEKAVGAKVPPLIALSWYAGFRDEVTNDVGDVQPGERWRLTVRLQRP
HGNANPMGFDYEAWLLEQGVRATGYVRPQPRADTPNVRLAAFVPGFGNVVEASRAALRARILRSLEGKQYAGVIVALVVG
DQRAIPQSDWQVFNRTGVSHLISISGLHITMIAGLFALGAGTLWRRSFFTGWQLPLRLPAQKVAALAGALAAFLYVLLAG
FGVPAQRTLYMLLVVALALWLGRITSIVHILCLALGVVVLLDPWAVLWPGFWLSFGAVATMLYATAGRTTASMPPQAGRW
RRLRAAVMLGAHTQYVVTVGLVPLTMLLFSQVSLVSPVANALAIPVISLVVTPLSLAGSLLPAPLSDGLLLLAHAIVQML
AQVLEWLGARRFAVWTAPAPPMWSFCWALFGTAWLLAPRGWPHRWAGMLGWLPLLTALPSSPPPGGMWVTAFDVGQGMAV
LVETHGHRLLYDTGPAYSLDSDGASRVIVPYLRARGIAKLDGVIISHSDLDHAGGAMSLLESVQVGWLASSLFDGHPAVE
ARRELHKPYLHCMAGQRWTWEGVHFAMLHPLPASHADIALKPNARSCTVKITAGKHSILLAGDIEAAQEAQLLARSAEGD
LAADVLLAPHHGSGTSSTQAFLNAVHPTLAIFQVGHRNRYKHPKAQVYARYGEMGIARLRTDVEGAVVLAFGDGIGVTLY
RASRPRYWHGR

Nucleotide


Download         Length: 2436 bp        

>NTDB_id=423379 G3257_RS18230 WP_176375864.1 4082819..4085254(-) (comA) [Janthinobacterium lividum strain EIF1]
ATGCGCACCCTGATACTCGGCTTTGCCGCTGGCGCCGCCTGGTTGCAGACGCAGGCAAGCTTGCCGCCGTACGGGGGCGT
GCTGCTGTGGGTGACCGCTGGCGTGTCGCTGCTGGCGGCACTGCTGCTGTGTCGCCATGCGCGCTGGCGTTCCTGCTTGC
ATTCCACTGTTGCGCTTGCCGCTGGCGTGGGACTGGGCTTTTACTGGGCCGCCTGGCTGGCCCAGGCCGCCATGGCGCCG
CAACTGGCGCTGGCTGATGAAGGCCAGGACATTGTTGTCACGGGTACGGTAGCCAGCCTGCCGTACCGCTTCGAGCAGGG
CGTGCGCTTCAATTTTGCCGTGGAGAAGGCTGTCGGGGCGAAGGTGCCGCCCCTGATCGCCCTGTCCTGGTACGCAGGTT
TTCGTGATGAAGTGACCAACGATGTGGGCGACGTGCAGCCGGGCGAACGCTGGCGCCTGACGGTGCGCTTGCAGCGTCCG
CACGGCAATGCGAACCCGATGGGTTTTGACTACGAGGCGTGGCTGCTGGAGCAGGGCGTGCGCGCCACGGGCTATGTGCG
GCCGCAGCCGCGCGCCGATACGCCGAACGTGCGCCTGGCCGCCTTCGTGCCCGGTTTCGGCAACGTGGTGGAGGCCAGCC
GGGCGGCATTGCGCGCGCGCATCCTGCGCAGCCTGGAAGGCAAGCAGTATGCGGGCGTGATCGTGGCGCTGGTGGTGGGC
GACCAGCGCGCGATTCCCCAGTCGGACTGGCAAGTGTTCAACCGCACTGGCGTGAGCCATCTGATTTCGATATCCGGTCT
GCACATTACCATGATCGCGGGACTCTTTGCGCTTGGTGCCGGCACGTTGTGGCGGCGCTCGTTTTTTACCGGCTGGCAGT
TGCCACTGCGGCTGCCGGCGCAAAAGGTGGCGGCGCTGGCCGGCGCGCTGGCGGCATTTTTGTATGTGCTGCTGGCCGGC
TTTGGCGTGCCCGCGCAGCGCACCTTGTATATGTTGCTGGTGGTGGCGCTGGCTCTGTGGCTGGGACGCATCACCAGCAT
CGTCCATATCCTGTGCCTGGCGCTGGGCGTGGTCGTGCTGCTCGATCCGTGGGCCGTGCTGTGGCCCGGCTTCTGGCTGT
CGTTCGGCGCCGTCGCCACCATGCTGTACGCAACGGCAGGGCGCACCACGGCGTCCATGCCGCCGCAGGCCGGACGCTGG
CGCCGTTTGCGTGCTGCCGTGATGCTGGGCGCGCACACGCAGTATGTGGTGACGGTGGGGCTGGTGCCGTTGACGATGCT
GCTGTTCTCGCAAGTGTCGCTCGTGTCGCCTGTCGCCAATGCGCTGGCCATTCCCGTCATCAGCCTGGTCGTCACGCCTT
TGTCGCTGGCTGGCAGCCTGCTGCCAGCGCCCCTGTCTGACGGATTGCTGCTGCTCGCGCACGCCATCGTGCAGATGCTG
GCGCAGGTGCTCGAATGGCTGGGCGCGCGCCGCTTTGCCGTGTGGACGGCGCCCGCGCCGCCAATGTGGAGTTTTTGCTG
GGCATTGTTTGGCACGGCCTGGCTGCTGGCGCCACGCGGCTGGCCGCACCGCTGGGCGGGCATGCTGGGCTGGCTGCCGC
TGTTGACGGCCTTGCCGTCCAGTCCGCCGCCAGGTGGCATGTGGGTGACGGCCTTTGACGTGGGGCAGGGCATGGCCGTG
CTGGTGGAAACGCATGGCCACCGCTTGCTGTACGACACGGGGCCCGCCTACAGCCTCGATTCCGATGGTGCCAGCCGGGT
CATCGTGCCTTATCTGCGCGCACGCGGCATAGCCAAGCTGGACGGCGTGATCATTTCCCACAGCGACCTCGATCACGCCG
GCGGCGCCATGTCTCTGTTGGAGAGCGTGCAAGTGGGCTGGCTGGCCTCGTCGCTGTTCGATGGCCATCCAGCCGTCGAG
GCGCGACGGGAGTTGCACAAACCCTATCTGCACTGCATGGCGGGCCAGCGCTGGACGTGGGAAGGCGTGCACTTCGCCAT
GCTGCACCCGCTGCCCGCCAGCCACGCGGACATTGCACTGAAGCCGAACGCCCGCAGCTGCACCGTGAAAATCACGGCAG
GCAAGCACTCGATCCTGCTGGCTGGCGACATCGAAGCGGCGCAAGAGGCGCAATTGCTGGCGCGCTCGGCGGAGGGCGAC
CTGGCCGCCGACGTATTGCTGGCGCCCCATCACGGCAGCGGCACCTCGTCGACACAGGCGTTCCTGAACGCCGTCCATCC
GACCCTGGCGATTTTCCAGGTGGGACACAGGAACCGTTATAAGCATCCGAAGGCGCAGGTGTATGCGCGCTATGGCGAGA
TGGGGATTGCACGGCTGCGCACGGATGTGGAAGGAGCGGTGGTGCTGGCGTTTGGCGATGGTATCGGCGTGACCTTGTAT
CGGGCCAGCCGGCCGCGTTATTGGCATGGGCGCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(554-756)

Competence protein (Competence)

(237-520)

Domain of unknown function (DUF4131) (DUF4131)

(27-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

47.971

100

0.496

Multiple sequence alignment