Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   G3R47_RS16880 Genome accession   NZ_CP048827
Coordinates   3504350..3504991 (-) Length   213 a.a.
NCBI ID   WP_000201231.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABF9692     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3499350..3509991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R47_RS16860 (G3R47_16830) aroK 3500266..3500835 (-) 570 WP_000643712.1 shikimate kinase AroK -
  G3R47_RS16865 (G3R47_16835) pilQ 3500847..3503012 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  G3R47_RS16870 (G3R47_16840) pilP 3503075..3503602 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  G3R47_RS16875 (G3R47_16845) pilO 3503613..3504353 (-) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  G3R47_RS16880 (G3R47_16850) pilN 3504350..3504991 (-) 642 WP_000201231.1 PilN domain-containing protein Machinery gene
  G3R47_RS16885 (G3R47_16855) pilM 3504991..3506049 (-) 1059 WP_038346731.1 pilus assembly protein PilM Machinery gene
  G3R47_RS16890 (G3R47_16860) ponA 3506210..3508765 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -
  G3R47_RS16895 (G3R47_16865) - 3508783..3509607 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  G3R47_RS16900 (G3R47_16870) - 3509610..3509942 (-) 333 WP_000169603.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24033.38 Da        Isoelectric Point: 5.4028

>NTDB_id=423346 G3R47_RS16880 WP_000201231.1 3504350..3504991(-) (pilN) [Acinetobacter baumannii strain ABF9692]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQREA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=423346 G3R47_RS16880 WP_000201231.1 3504350..3504991(-) (pilN) [Acinetobacter baumannii strain ABF9692]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGTACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGAAGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.531

100

0.995
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment