Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   G3R47_RS16875 Genome accession   NZ_CP048827
Coordinates   3503613..3504353 (-) Length   246 a.a.
NCBI ID   WP_000076099.1    Uniprot ID   A0A9P2QDS6
Organism   Acinetobacter baumannii strain ABF9692     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3498613..3509353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R47_RS16855 (G3R47_16825) aroB 3499155..3500237 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  G3R47_RS16860 (G3R47_16830) aroK 3500266..3500835 (-) 570 WP_000643712.1 shikimate kinase AroK -
  G3R47_RS16865 (G3R47_16835) pilQ 3500847..3503012 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  G3R47_RS16870 (G3R47_16840) pilP 3503075..3503602 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  G3R47_RS16875 (G3R47_16845) pilO 3503613..3504353 (-) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  G3R47_RS16880 (G3R47_16850) pilN 3504350..3504991 (-) 642 WP_000201231.1 PilN domain-containing protein Machinery gene
  G3R47_RS16885 (G3R47_16855) pilM 3504991..3506049 (-) 1059 WP_038346731.1 pilus assembly protein PilM Machinery gene
  G3R47_RS16890 (G3R47_16860) ponA 3506210..3508765 (+) 2556 WP_000736683.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27801.55 Da        Isoelectric Point: 4.8357

>NTDB_id=423345 G3R47_RS16875 WP_000076099.1 3503613..3504353(-) (pilO) [Acinetobacter baumannii strain ABF9692]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=423345 G3R47_RS16875 WP_000076099.1 3503613..3504353(-) (pilO) [Acinetobacter baumannii strain ABF9692]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment