Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   BAMOH1_RS10705 Genome accession   NZ_CP061853
Coordinates   2233615..2235105 (-) Length   496 a.a.
NCBI ID   WP_072177777.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MOH1-5b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2228615..2240105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMOH1_RS10675 (BAMOH1_10675) gudB 2228698..2229972 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  BAMOH1_RS10680 (BAMOH1_10680) - 2230133..2230717 (-) 585 WP_003153412.1 genetic competence negative regulator -
  BAMOH1_RS10685 (BAMOH1_10685) - 2230869..2231657 (-) 789 WP_191389065.1 metallophosphoesterase -
  BAMOH1_RS10690 (BAMOH1_10690) - 2231744..2232202 (-) 459 WP_007409443.1 YpbF family protein -
  BAMOH1_RS10695 (BAMOH1_10695) - 2232271..2233035 (-) 765 WP_191389067.1 LysM peptidoglycan-binding domain-containing protein -
  BAMOH1_RS10700 (BAMOH1_10700) - 2233013..2233600 (-) 588 WP_007409441.1 CPBP family intramembrane glutamic endopeptidase -
  BAMOH1_RS10705 (BAMOH1_10705) recS 2233615..2235105 (-) 1491 WP_072177777.1 ATP-dependent DNA helicase RecQ Machinery gene
  BAMOH1_RS10710 (BAMOH1_10710) - 2235098..2236156 (-) 1059 WP_191389069.1 helix-turn-helix domain-containing protein -
  BAMOH1_RS10715 (BAMOH1_10715) - 2236425..2236673 (+) 249 WP_003153403.1 ferredoxin -
  BAMOH1_RS10720 (BAMOH1_10720) - 2236809..2237381 (-) 573 WP_003153402.1 ECF transporter S component -
  BAMOH1_RS10725 (BAMOH1_10725) serA 2237871..2239448 (+) 1578 WP_017418054.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56055.10 Da        Isoelectric Point: 6.1144

>NTDB_id=423345 BAMOH1_RS10705 WP_072177777.1 2233615..2235105(-) (recS) [Bacillus amyloliquefaciens strain MOH1-5b]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNAEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEAILAVIRDAGTGDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KEQLQEELTYRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPEDQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=423345 BAMOH1_RS10705 WP_072177777.1 2233615..2235105(-) (recS) [Bacillus amyloliquefaciens strain MOH1-5b]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAAGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTTGTGCTGATTATTTCACCGCTTCTTTCATTAATGGAAGATCAGGTACAGCAGCTGAAAGCGAAAGGG
GAAAAGCGGGTTGCGGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATCCTCAGCAACATCAGCCGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTGCTGAACCGTTTGAAAAATGTCCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTATTCGAAGCTCGGGCCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACAAAAGAAACGCTCAGAGACGTGACGGATGTGCTCGG
CCTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTCCTGGCGGCAGAACATTTGGCGGATAATG
CCGAGAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAATGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGGGA
CAGAATCTTGATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATCTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
GGAAAGCCTGTCTGATTATGACCTGGAAGCCATTCTGGCCGTCATACGGGATGCCGGTACGGGTGATGAGCGAAAGCTTC
GGGACGTTCTGATCAATAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGAGCAGCTGCAGGAAGAACTGACATACCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGAAGATCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAACATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGTTCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

68.548

100

0.685

Multiple sequence alignment