Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   G3R47_RS02890 Genome accession   NZ_CP048827
Coordinates   601036..601836 (+) Length   266 a.a.
NCBI ID   WP_004738086.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABF9692     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 596036..606836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R47_RS02865 (G3R47_02870) - 596946..598244 (+) 1299 WP_086225874.1 glycosyltransferase family 4 protein -
  G3R47_RS02870 (G3R47_02875) - 598269..598820 (+) 552 WP_000669565.1 phosphatase PAP2 family protein -
  G3R47_RS02875 (G3R47_02880) iscX 598920..599120 (+) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  G3R47_RS02880 (G3R47_02885) ndk 599234..599665 (+) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  G3R47_RS02885 (G3R47_02890) rlmN 599788..601020 (+) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  G3R47_RS02890 (G3R47_02895) pilF 601036..601836 (+) 801 WP_004738086.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  G3R47_RS02895 (G3R47_02900) - 601827..602618 (+) 792 WP_000405163.1 helix-turn-helix domain-containing protein -
  G3R47_RS02900 (G3R47_02905) ispG 602640..603755 (+) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  G3R47_RS02905 (G3R47_02910) hisS 603752..605044 (+) 1293 WP_000095261.1 histidine--tRNA ligase -
  G3R47_RS02910 (G3R47_02915) - 605073..605771 (+) 699 WP_000058787.1 YfgM family protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30094.44 Da        Isoelectric Point: 9.2307

>NTDB_id=423317 G3R47_RS02890 WP_004738086.1 601036..601836(+) (pilF) [Acinetobacter baumannii strain ABF9692]
MSTPKLKIMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=423317 G3R47_RS02890 WP_004738086.1 601036..601836(+) (pilF) [Acinetobacter baumannii strain ABF9692]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCAAGTGGTTGTCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGCCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAACCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCTTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACTTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGTGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

100

100

1
  pilF Acinetobacter baylyi ADP1

74.231

97.744

0.726

Multiple sequence alignment