Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   G3R47_RS01970 Genome accession   NZ_CP048827
Coordinates   401613..402839 (-) Length   408 a.a.
NCBI ID   WP_000279215.1    Uniprot ID   A0A0H5FGB3
Organism   Acinetobacter baumannii strain ABF9692     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 396613..407839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R47_RS01940 (G3R47_01945) - 396645..397955 (+) 1311 WP_020752743.1 tetratricopeptide repeat protein -
  G3R47_RS01945 (G3R47_01950) - 398032..398358 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  G3R47_RS01950 (G3R47_01955) rlmB 398460..399209 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  G3R47_RS01955 (G3R47_01960) - 399244..400158 (+) 915 WP_000075015.1 DMT family transporter -
  G3R47_RS01960 (G3R47_01965) coaE 400155..400751 (-) 597 WP_000874124.1 dephospho-CoA kinase -
  G3R47_RS20175 (G3R47_01970) pilD 400753..401613 (-) 861 WP_001152269.1 prepilin peptidase Machinery gene
  G3R47_RS01970 (G3R47_01975) pilC 401613..402839 (-) 1227 WP_000279215.1 type II secretion system F family protein Machinery gene
  G3R47_RS01975 (G3R47_01980) pilB 402869..404580 (-) 1712 Protein_377 type IV-A pilus assembly ATPase PilB -
  G3R47_RS01980 (G3R47_01985) tpiA 404871..405665 (+) 795 WP_000016939.1 triose-phosphate isomerase -
  G3R47_RS01985 (G3R47_01990) secG 405678..406007 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -
  G3R47_RS02005 (G3R47_02010) rimP 406649..407173 (+) 525 WP_000777730.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44950.46 Da        Isoelectric Point: 9.9566

>NTDB_id=423312 G3R47_RS01970 WP_000279215.1 401613..402839(-) (pilC) [Acinetobacter baumannii strain ABF9692]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRISNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=423312 G3R47_RS01970 WP_000279215.1 401613..402839(-) (pilC) [Acinetobacter baumannii strain ABF9692]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAGGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTGACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAATTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAATTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCGGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGACGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCGCTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTAGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGATCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACCTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H5FGB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

100

100

1
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

53.827

99.265

0.534
  pilG Neisseria meningitidis 44/76-A

47.236

97.549

0.461
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

41.089

99.02

0.407
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment