Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BAMOH1_RS03910 Genome accession   NZ_CP061853
Coordinates   784300..785016 (+) Length   238 a.a.
NCBI ID   WP_095273229.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MOH1-5b     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 779300..790016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMOH1_RS03880 (BAMOH1_03880) - 779479..779856 (+) 378 WP_021493879.1 DUF1992 domain-containing protein -
  BAMOH1_RS03885 (BAMOH1_03885) - 779866..780297 (-) 432 WP_017419105.1 Hsp20/alpha crystallin family protein -
  BAMOH1_RS03890 (BAMOH1_03890) - 780313..780555 (-) 243 WP_003155595.1 spore germination protein -
  BAMOH1_RS03895 (BAMOH1_03895) - 780570..780830 (-) 261 WP_007408496.1 spore germination protein -
  BAMOH1_RS03900 (BAMOH1_03900) treP 781101..782516 (+) 1416 WP_129091756.1 PTS system trehalose-specific EIIBC component -
  BAMOH1_RS03905 (BAMOH1_03905) treC 782593..784278 (+) 1686 WP_191389564.1 alpha,alpha-phosphotrehalase -
  BAMOH1_RS03910 (BAMOH1_03910) treR 784300..785016 (+) 717 WP_095273229.1 trehalose operon repressor Regulator
  BAMOH1_RS03915 (BAMOH1_03915) - 785149..785814 (+) 666 WP_061861964.1 NAD(P)H-dependent oxidoreductase -
  BAMOH1_RS03920 (BAMOH1_03920) - 785850..786611 (-) 762 WP_022552750.1 YibE/F family protein -
  BAMOH1_RS03925 (BAMOH1_03925) - 786608..787747 (-) 1140 WP_191389566.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27438.47 Da        Isoelectric Point: 7.3803

>NTDB_id=423290 BAMOH1_RS03910 WP_095273229.1 784300..785016(+) (treR) [Bacillus amyloliquefaciens strain MOH1-5b]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTAVHRLGLILPPTEAAKELGAEADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=423290 BAMOH1_RS03910 WP_095273229.1 784300..785016(+) (treR) [Bacillus amyloliquefaciens strain MOH1-5b]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGGCGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCACAGAAGCCGCAAAAGAGCTTGGTGCAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACACGTGCCTCTATTGACGAAGGCGATTTGCGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCTTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGGGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424