Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   BAMOH1_RS02160 Genome accession   NZ_CP061853
Coordinates   431082..431516 (+) Length   144 a.a.
NCBI ID   WP_003156263.1    Uniprot ID   A0A9P1JEY0
Organism   Bacillus amyloliquefaciens strain MOH1-5b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 426082..436516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMOH1_RS02130 (BAMOH1_02130) - 426755..427615 (+) 861 WP_021495102.1 SDR family oxidoreductase -
  BAMOH1_RS02135 (BAMOH1_02135) - 427628..428131 (+) 504 WP_021495101.1 D-lyxose/D-mannose family sugar isomerase -
  BAMOH1_RS02140 (BAMOH1_02140) - 428219..428842 (+) 624 WP_022552606.1 GNAT family N-acetyltransferase -
  BAMOH1_RS02145 (BAMOH1_02145) - 428849..429271 (+) 423 WP_029974297.1 pyridoxamine 5'-phosphate oxidase family protein -
  BAMOH1_RS02150 (BAMOH1_02150) - 429769..430578 (+) 810 WP_014416933.1 lipid II flippase Amj family protein -
  BAMOH1_RS02155 (BAMOH1_02155) - 430616..430906 (-) 291 WP_007410179.1 DUF3817 domain-containing protein -
  BAMOH1_RS02160 (BAMOH1_02160) lrpC 431082..431516 (+) 435 WP_003156263.1 Lrp/AsnC family transcriptional regulator Machinery gene
  BAMOH1_RS02165 (BAMOH1_02165) - 431580..433766 (+) 2187 WP_191389481.1 DNA topoisomerase III -
  BAMOH1_RS02170 (BAMOH1_02170) - 433999..435075 (+) 1077 WP_128496455.1 lipoprotein YdaJ -
  BAMOH1_RS02175 (BAMOH1_02175) - 435056..435904 (+) 849 WP_191389482.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16474.10 Da        Isoelectric Point: 8.6776

>NTDB_id=423286 BAMOH1_RS02160 WP_003156263.1 431082..431516(+) (lrpC) [Bacillus amyloliquefaciens strain MOH1-5b]
MKLDNVDLSIIKELQRDSRLSMRELGRKIKLSAPSVTERVRQLESFGVIKRYTLDIDQKKIGLPVSCIVEATVKNGKYDQ
FKTYIQSIPNIEFCFRVAGAACYMLKINADSLETIEHFINRTSPYAQTVTHVIFSEIDTKNVLD

Nucleotide


Download         Length: 435 bp        

>NTDB_id=423286 BAMOH1_RS02160 WP_003156263.1 431082..431516(+) (lrpC) [Bacillus amyloliquefaciens strain MOH1-5b]
ATGAAACTAGATAATGTTGATCTGAGCATCATTAAAGAGCTGCAGCGGGACAGCCGCCTGTCCATGCGGGAGCTTGGCAG
AAAAATCAAATTGTCAGCCCCGTCCGTCACAGAGCGTGTCAGACAGCTTGAATCCTTCGGCGTTATTAAACGCTATACAT
TGGACATTGATCAAAAAAAGATCGGACTTCCCGTTTCCTGCATTGTCGAAGCGACGGTGAAAAACGGAAAATACGATCAA
TTCAAAACCTACATTCAATCCATTCCCAACATTGAATTTTGTTTTCGGGTCGCCGGCGCGGCGTGTTATATGCTGAAGAT
TAACGCGGACAGCCTGGAAACGATCGAACACTTCATTAACCGCACCTCTCCGTATGCCCAAACCGTGACCCACGTCATTT
TCTCAGAAATTGACACAAAAAACGTCCTCGATTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(69-135)

AsnC-type helix-turn-helix domain (HTH_AsnC-type)

(3-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1JEY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

81.56

97.917

0.799