Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RHOM_RS08700 Genome accession   NC_015977
Coordinates   1938698..1940554 (-) Length   618 a.a.
NCBI ID   WP_014079928.1    Uniprot ID   G2SWX6
Organism   Roseburia hominis A2-183     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1933698..1945554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RHOM_RS08680 (RHOM_08880) - 1933884..1935209 (-) 1326 WP_242823126.1 SH3 domain-containing protein -
  RHOM_RS08690 (RHOM_08885) - 1935573..1936721 (-) 1149 WP_014079926.1 DUF4422 domain-containing protein -
  RHOM_RS08695 (RHOM_08890) - 1936808..1938115 (+) 1308 WP_014079927.1 DNA polymerase IV -
  RHOM_RS08700 (RHOM_08895) rcrQ 1938698..1940554 (-) 1857 WP_014079928.1 ABC transporter ATP-binding protein Regulator
  RHOM_RS08705 (RHOM_08900) - 1940547..1942868 (-) 2322 WP_014079929.1 ABC transporter ATP-binding protein -
  RHOM_RS08710 (RHOM_08905) - 1942852..1943337 (-) 486 WP_014079930.1 MarR family winged helix-turn-helix transcriptional regulator -
  RHOM_RS08715 (RHOM_08910) aroD 1943450..1944217 (-) 768 WP_014079931.1 type I 3-dehydroquinate dehydratase -
  RHOM_RS08720 (RHOM_08915) - 1944406..1945437 (+) 1032 WP_014079932.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68267.90 Da        Isoelectric Point: 7.0998

>NTDB_id=42326 RHOM_RS08700 WP_014079928.1 1938698..1940554(-) (rcrQ) [Roseburia hominis A2-183]
MSNGNETAKGMGRRRGPMGGRGMTPGEKPKDLKGAIGKLASYIRHFKFAIVIVAVFAACSTVFSVIGPKILGKATTALSE
GLMAKIRGTGGIDFTYIGKILLFVLGLYLLSALFSFVQGWIMTGVTQKICYQLRKEISEKINRMPMKYFESRTYGEVLSR
ITNDVDTLGQGLNQSITTIITSVATLIGVFIMMLSISPLMTLIALVILPVSAGLISFVVKKSQKYFKNQQEYLGHINGQV
EEIYGGHLVIKAFNREQDTIEEFDATNQKLYESAWKSQFLSGMMQPIMMFVGNLGYAAVALSGGLLAIRGTITIGDIQAF
IQYVKSFTQPIQQIAQVINQVQSMAAASERVFEFLNEEEEDQSVENPCDISKVTGAVSFEHVHFGYQPDQTIIHDFSVNV
APGQKIAIVGPTGAGKTTMVKLLMRFYDVNSGAICLDGHDVRSFNRRDLREAFGMVLQDTWLFQGTIMENIRYGRLDATD
EEVIAAAKAAHADHFIRTLPGGYQMELNEDASNVSQGQKQLLTIARAILADNKILILDEATSSVDTRTEVAIQKAMDHLM
KGRTSFVIAHRLSTIRDADMILVMKDGDIVEQGRHEELLKKQGFYANLYNSQFEETVA

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=42326 RHOM_RS08700 WP_014079928.1 1938698..1940554(-) (rcrQ) [Roseburia hominis A2-183]
ATGAGTAACGGAAATGAGACGGCAAAAGGAATGGGCAGACGCCGTGGACCGATGGGCGGACGCGGTATGACGCCGGGAGA
GAAGCCGAAGGATTTAAAGGGAGCCATCGGAAAACTGGCATCCTATATCCGGCATTTTAAGTTTGCAATCGTTATTGTTG
CAGTATTTGCGGCGTGCTCCACGGTGTTCAGCGTAATCGGACCAAAGATTCTGGGAAAAGCGACGACAGCGCTCTCGGAA
GGACTGATGGCGAAGATCCGCGGAACAGGCGGAATAGATTTTACTTATATAGGAAAGATCCTGCTGTTTGTATTGGGGCT
GTATCTTCTCAGTGCACTGTTTTCGTTTGTGCAGGGCTGGATTATGACCGGGGTGACCCAGAAGATCTGTTACCAGCTCC
GGAAGGAAATCTCGGAGAAGATCAACCGAATGCCGATGAAGTATTTTGAGAGCCGTACCTACGGTGAGGTGCTTTCCAGA
ATCACCAACGATGTGGATACCTTAGGACAGGGACTCAACCAGAGCATTACCACGATCATTACCTCGGTTGCGACACTGAT
CGGTGTATTTATCATGATGCTCAGCATCTCGCCGCTCATGACGCTGATCGCGCTTGTGATCCTGCCGGTCTCCGCGGGGC
TGATTTCCTTCGTTGTGAAGAAGTCGCAGAAATACTTTAAGAATCAGCAGGAATATCTGGGACATATCAACGGACAGGTG
GAGGAGATTTACGGAGGACATCTGGTCATTAAGGCATTTAACAGAGAGCAGGATACGATCGAGGAGTTTGATGCGACGAA
CCAGAAGCTGTATGAATCGGCATGGAAGTCACAGTTTCTCTCCGGTATGATGCAGCCGATCATGATGTTTGTCGGAAATC
TCGGATATGCAGCCGTTGCGCTTAGCGGAGGTCTGCTTGCTATCCGGGGAACGATCACAATCGGAGATATTCAGGCGTTT
ATCCAGTACGTGAAAAGTTTCACACAGCCGATCCAGCAGATCGCACAGGTCATCAACCAGGTGCAGTCGATGGCGGCGGC
TTCGGAGCGTGTGTTTGAATTCCTGAATGAGGAGGAAGAAGACCAGTCCGTGGAGAATCCTTGTGATATTTCCAAGGTGA
CAGGCGCGGTATCGTTTGAGCATGTTCATTTCGGCTACCAGCCGGATCAGACGATCATTCACGACTTCAGCGTAAATGTG
GCTCCGGGACAAAAGATTGCCATTGTCGGACCGACAGGCGCCGGAAAGACCACTATGGTCAAACTTCTGATGCGTTTTTA
TGATGTAAACAGCGGCGCAATCTGCCTTGACGGTCATGACGTGAGAAGCTTTAACCGGCGGGATCTGCGTGAGGCATTCG
GTATGGTGCTTCAGGATACCTGGCTGTTTCAGGGAACGATCATGGAAAATATCCGTTACGGCAGGCTGGATGCGACGGAT
GAGGAAGTCATTGCCGCAGCGAAGGCGGCGCACGCCGACCACTTTATCCGCACACTGCCGGGTGGCTATCAGATGGAGTT
AAACGAGGATGCAAGCAACGTCTCACAGGGGCAGAAGCAGCTTCTCACCATCGCCAGAGCAATTCTTGCAGACAACAAGA
TCCTGATTCTTGACGAGGCGACGTCGTCGGTTGACACACGCACGGAGGTGGCAATCCAGAAAGCGATGGATCACCTGATG
AAGGGGCGTACCAGCTTTGTCATCGCACACCGCCTGTCGACCATACGCGATGCGGATATGATCCTCGTCATGAAGGACGG
CGACATCGTAGAGCAGGGCAGACACGAAGAACTGCTCAAAAAGCAGGGCTTTTATGCGAACCTGTATAACTCGCAGTTCG
AGGAGACCGTGGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(51-330)

ABC transporter (ABC_tran)

(394-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2SWX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.19

95.146

0.487

Multiple sequence alignment