Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   G4D59_RS11090 Genome accession   NZ_CP048811
Coordinates   2183355..2183690 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SCU11     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2178355..2188690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D59_RS11070 (G4D59_11025) gcvT 2178831..2179928 (-) 1098 WP_017367586.1 glycine cleavage system aminomethyltransferase GcvT -
  G4D59_RS11075 (G4D59_11030) - 2180490..2182160 (+) 1671 WP_017367587.1 DEAD/DEAH box helicase -
  G4D59_RS11080 (G4D59_11035) - 2182175..2182972 (+) 798 WP_017367588.1 YqhG family protein -
  G4D59_RS11085 (G4D59_11040) - 2183157..2183321 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  G4D59_RS11090 (G4D59_11045) sinR 2183355..2183690 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  G4D59_RS11095 (G4D59_11050) tasA 2183758..2184558 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  G4D59_RS11100 (G4D59_11055) sipW 2184617..2185189 (-) 573 WP_017357979.1 signal peptidase I SipW -
  G4D59_RS11105 (G4D59_11060) tapA 2185240..2185767 (-) 528 WP_017367589.1 amyloid fiber anchoring/assembly protein TapA -
  G4D59_RS11110 (G4D59_11065) - 2186020..2186346 (+) 327 WP_017367590.1 DUF3889 domain-containing protein -
  G4D59_RS11115 (G4D59_11070) - 2186382..2186570 (-) 189 WP_017367591.1 YqzE family protein -
  G4D59_RS11120 (G4D59_11075) - 2186631..2187014 (-) 384 WP_017357982.1 competence type IV pilus minor pilin ComGG -
  G4D59_RS11125 (G4D59_11080) comGF 2187011..2187508 (-) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  G4D59_RS11130 (G4D59_11085) comGE 2187450..2187764 (-) 315 WP_017367593.1 competence type IV pilus minor pilin ComGE -
  G4D59_RS11135 (G4D59_11090) comGD 2187748..2188194 (-) 447 WP_017367594.1 competence type IV pilus minor pilin ComGD -
  G4D59_RS11140 (G4D59_11095) comGC 2188187..2188480 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=423210 G4D59_RS11090 WP_017357978.1 2183355..2183690(+) (sinR) [Bacillus altitudinis strain SCU11]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=423210 G4D59_RS11090 WP_017357978.1 2183355..2183690(+) (sinR) [Bacillus altitudinis strain SCU11]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment