Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BAINH2_RS03870 Genome accession   NZ_CP061852
Coordinates   791808..792524 (+) Length   238 a.a.
NCBI ID   WP_053573584.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain INH2-4b     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 786808..797524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAINH2_RS03840 (BAINH2_03840) - 786988..787365 (+) 378 WP_007610033.1 DUF1992 domain-containing protein -
  BAINH2_RS03845 (BAINH2_03845) - 787375..787806 (-) 432 WP_017419105.1 Hsp20/alpha crystallin family protein -
  BAINH2_RS03850 (BAINH2_03850) - 787822..788064 (-) 243 WP_003155595.1 spore germination protein -
  BAINH2_RS03855 (BAINH2_03855) - 788079..788339 (-) 261 WP_014417185.1 spore germination protein -
  BAINH2_RS03860 (BAINH2_03860) treP 788610..790025 (+) 1416 WP_053573582.1 PTS system trehalose-specific EIIBC component -
  BAINH2_RS03865 (BAINH2_03865) treC 790101..791786 (+) 1686 WP_053573583.1 alpha,alpha-phosphotrehalase -
  BAINH2_RS03870 (BAINH2_03870) treR 791808..792524 (+) 717 WP_053573584.1 trehalose operon repressor Regulator
  BAINH2_RS03875 (BAINH2_03875) - 792657..793322 (+) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  BAINH2_RS03880 (BAINH2_03880) - 793358..794119 (-) 762 WP_007408500.1 YibE/F family protein -
  BAINH2_RS03885 (BAINH2_03885) - 794116..795255 (-) 1140 WP_053573585.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27461.46 Da        Isoelectric Point: 7.3204

>NTDB_id=423141 BAINH2_RS03870 WP_053573584.1 791808..792524(+) (treR) [Bacillus amyloliquefaciens strain INH2-4b]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEQIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLDDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=423141 BAINH2_RS03870 WP_053573584.1 791808..792524(+) (treR) [Bacillus amyloliquefaciens strain INH2-4b]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAGGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACAAATTATTTTGGACAAGGATTACTTTGTAAAAAAACATGTGCCTCTACTGACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGACGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424