Detailed information NTG0423125

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BAINH2_RS01530
• Genome accession: NZ_CP061852
• Coordinates: 310676..311797 (+)
• Length: 373 a.a.
• NCBI ID: WP_033575143.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain INH2-4b
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 305676..316797

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAINH2_RS01510 (BAINH2_01510)	-	305985..306980 (-)	996	WP_015416740.1	DUF5105 domain-containing protein	-
BAINH2_RS01515 (BAINH2_01515)	-	307107..308507 (+)	1401	WP_015416741.1	YcdB/YcdC domain-containing protein	-
BAINH2_RS01520 (BAINH2_01520)	-	308708..310066 (+)	1359	WP_053573762.1	YcdB/YcdC domain-containing protein	-
BAINH2_RS01525 (BAINH2_01525)	-	310063..310566 (-)	504	WP_015416743.1	M15 family metallopeptidase	-
BAINH2_RS01530 (BAINH2_01530)	rapF	310676..311797 (+)	1122	WP_033575143.1	tetratricopeptide repeat protein	Regulator
BAINH2_RS01535 (BAINH2_01535)	-	311913..312692 (+)	780	WP_053573761.1	glucose 1-dehydrogenase	-
BAINH2_RS01540 (BAINH2_01540)	-	312776..314455 (+)	1680	WP_039252865.1	alpha-glucosidase	-
BAINH2_RS01545 (BAINH2_01545)	-	314640..315599 (+)	960	WP_031378693.1	metal ABC transporter substrate-binding protein	-
BAINH2_RS01550 (BAINH2_01550)	-	315654..316349 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.49 Da
• Isoelectric Point: 5.0032

>NTDB_id=423125 BAINH2_RS01530 WP_033575143.1 310676..311797(+) (rapF) [Bacillus amyloliquefaciens strain INH2-4b]
MKSKIPSEEVAVKMNEWYKLIRAFEADQAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=423125 BAINH2_RS01530 WP_033575143.1 310676..311797(+) (rapF) [Bacillus amyloliquefaciens strain INH2-4b]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TCAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGATTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402