Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   GOP56_RS02710 Genome accession   NZ_CP048799
Coordinates   622788..623744 (+) Length   318 a.a.
NCBI ID   WP_003338614.1    Uniprot ID   -
Organism   Brevibacillus sp. 7WMA2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 617788..628744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOP56_RS02695 (GOP56_02695) - 618665..619648 (-) 984 WP_163244418.1 hypothetical protein -
  GOP56_RS02700 (GOP56_02700) - 619867..621051 (+) 1185 WP_096887567.1 pyridoxal phosphate-dependent aminotransferase -
  GOP56_RS02705 (GOP56_02705) asnS 621164..622456 (+) 1293 WP_003341640.1 asparagine--tRNA ligase -
  GOP56_RS02710 (GOP56_02710) ceuB 622788..623744 (+) 957 WP_003338614.1 ABC transporter permease Machinery gene
  GOP56_RS02715 (GOP56_02715) - 623731..624687 (+) 957 WP_163244419.1 iron chelate uptake ABC transporter family permease subunit -
  GOP56_RS02720 (GOP56_02720) - 624681..625439 (+) 759 WP_003338616.1 ABC transporter ATP-binding protein -
  GOP56_RS02725 (GOP56_02725) - 625848..626813 (+) 966 WP_163246787.1 siderophore ABC transporter substrate-binding protein -
  GOP56_RS02730 (GOP56_02730) - 626989..627723 (+) 735 WP_163244420.1 DnaD domain-containing protein -
  GOP56_RS02735 (GOP56_02735) - 627987..628427 (+) 441 WP_003341630.1 hypothetical protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35360.93 Da        Isoelectric Point: 9.9561

>NTDB_id=423076 GOP56_RS02710 WP_003338614.1 622788..623744(+) (ceuB) [Brevibacillus sp. 7WMA2]
MKKRYLFLALIILSMCSLFIGVKNITPLDILNFNNEQVEIFLISRVPRLVSIIVAGISLSICGLIMQQITRNKFVSPTTA
GTMDCARLGVLVSLMLFTTESPIVKMIVAFIFALGGTFIFMKILRKIKFKDNIFIPLVGIMFGNIISSISTFFAYKYDLI
QNISSWLQGDFSMIMKGRYELLYISIPLVIIAFLYANKFTVAGMGEEFAVNLGLNYQRVINIGLIIVAMISSLVLLTVGM
IPFLGLIIPNIVSIYRGDNLRNSLPHTALLGAVFVLACDILGRIVIFPYELSIGLMVGVIGSGIFLYLLMRRNAYATM

Nucleotide


Download         Length: 957 bp        

>NTDB_id=423076 GOP56_RS02710 WP_003338614.1 622788..623744(+) (ceuB) [Brevibacillus sp. 7WMA2]
ATGAAAAAGAGATATTTATTTTTAGCATTAATCATCCTATCCATGTGCTCCTTATTTATTGGAGTTAAAAACATTACTCC
ACTTGACATTCTAAATTTTAATAATGAGCAGGTTGAAATTTTCTTAATTAGCCGTGTTCCACGATTAGTTAGCATTATTG
TGGCTGGTATTAGCCTTAGTATCTGTGGCTTAATCATGCAGCAGATCACCCGTAATAAATTCGTATCTCCTACTACTGCT
GGAACGATGGACTGTGCTCGATTAGGAGTGCTGGTATCACTCATGCTATTTACTACGGAGAGTCCGATTGTAAAGATGAT
TGTCGCATTTATTTTTGCCTTAGGTGGCACCTTTATTTTTATGAAAATCCTTAGAAAAATAAAGTTCAAAGACAATATCT
TTATTCCATTGGTAGGTATTATGTTTGGTAATATTATCAGTTCTATAAGCACTTTCTTTGCTTATAAATATGACCTGATA
CAAAATATATCCTCATGGTTACAAGGAGACTTCTCCATGATCATGAAGGGAAGATATGAGCTTTTGTATATTAGTATCCC
GCTTGTCATTATCGCCTTTCTTTATGCGAATAAATTCACGGTCGCAGGAATGGGAGAAGAATTCGCGGTTAATCTAGGAC
TCAACTATCAGCGTGTGATCAATATCGGATTAATCATCGTTGCTATGATTTCCTCTCTGGTATTGCTCACAGTCGGAATG
ATTCCATTCCTTGGTTTAATTATTCCGAACATCGTTTCCATTTATCGTGGGGATAATCTACGGAACAGTCTACCGCATAC
AGCCTTACTCGGAGCCGTATTTGTCCTAGCATGTGATATATTAGGGCGTATCGTAATTTTTCCTTATGAGCTCTCGATTG
GACTTATGGTCGGAGTTATCGGCAGTGGAATCTTCCTGTACTTACTCATGAGGAGAAATGCATATGCAACAATGTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

57.98

96.541

0.56

Multiple sequence alignment