Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GOP56_RS01370 Genome accession   NZ_CP048799
Coordinates   267933..269657 (+) Length   574 a.a.
NCBI ID   WP_163244287.1    Uniprot ID   A0AAE6WIC1
Organism   Brevibacillus sp. 7WMA2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 262933..274657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOP56_RS01345 (GOP56_01345) dxs 263161..265032 (+) 1872 WP_371807985.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GOP56_RS01350 (GOP56_01350) - 265041..265868 (+) 828 WP_163244284.1 TlyA family RNA methyltransferase -
  GOP56_RS01355 (GOP56_01355) - 266053..266355 (+) 303 WP_254068538.1 hypothetical protein -
  GOP56_RS01360 (GOP56_01360) - 266609..267466 (+) 858 WP_163244286.1 NAD(+)/NADH kinase -
  GOP56_RS01365 (GOP56_01365) ahrC 267471..267920 (+) 450 WP_003337877.1 transcriptional regulator AhrC/ArgR -
  GOP56_RS01370 (GOP56_01370) recN 267933..269657 (+) 1725 WP_163244287.1 DNA repair protein RecN Machinery gene
  GOP56_RS01375 (GOP56_01375) - 269696..270222 (+) 527 Protein_261 transposase -
  GOP56_RS23640 (GOP56_01380) - 270284..270586 (+) 303 WP_163244288.1 hypothetical protein -
  GOP56_RS01385 (GOP56_01385) - 270583..271215 (+) 633 WP_163244289.1 hypothetical protein -
  GOP56_RS01390 (GOP56_01390) - 271314..271532 (+) 219 WP_163244290.1 hypothetical protein -
  GOP56_RS01395 (GOP56_01395) - 272253..272636 (-) 384 WP_003336377.1 hypothetical protein -
  GOP56_RS01400 (GOP56_01400) - 272690..273394 (-) 705 WP_254068540.1 hypothetical protein -

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 64828.93 Da        Isoelectric Point: 5.2134

>NTDB_id=423073 GOP56_RS01370 WP_163244287.1 267933..269657(+) (recN) [Brevibacillus sp. 7WMA2]
MIHELTIRNFAIIKHTTISFGHGLNILTGETGAGKSIIIDALGQLLGDRSSAELIRYGEKRAEIEGLFECKPGHPAYAVC
ESFGIQVDPDGILVVRRDISSTGKSIIRVNGQLITLAMLRELGPWLVNVHGQHDHQALMQSDKHIRWLDAYGESRLAGTK
QEFSHLYQKYRKAVQDLSRMAKNERELMQRIDLLSYQLNEIEAAKLIPGEDEKLIQQRKKWANIEKIFAGVQDAYMSLYG
DQRGQDWLGHAMGELERVQQYDEQLVPIVETIQSAYYQVEDTVQQLRHIKDRLDFDPAILAEVEGRLDQLSGLKRKYGKS
VDEILEYAAGIQDELDEIQHYDDRLQQMEKTLREAEADVAIEALELSTLRRELAVELANLIEHELKELHMERARFAIEIK
HIPDERGIEVEGNRVRVSSRGIDEIEFLIAPNPGEPLRPLTKIASGGELSRVMLAIKSILATTEQVGTLIFDEVDTGVSG
RAAQAIAEKLARVAKHRQVLCITHLPQVASMADAHFYIQKQMDEQETSTTVVLMSSEERVNELARMLGGAEVTEKTKEHA
KEMILLGEERKAVN

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=423073 GOP56_RS01370 WP_163244287.1 267933..269657(+) (recN) [Brevibacillus sp. 7WMA2]
ATGATCCACGAACTAACCATCCGCAATTTTGCGATTATCAAACACACCACGATCTCTTTTGGGCATGGGCTTAATATCCT
GACAGGAGAGACAGGGGCAGGTAAATCCATTATTATCGATGCGCTAGGGCAATTGCTCGGTGATCGCAGTTCAGCAGAGC
TTATCCGTTACGGAGAAAAACGGGCAGAGATAGAAGGTCTGTTCGAATGTAAGCCAGGGCACCCTGCTTACGCCGTTTGT
GAGAGCTTCGGCATTCAGGTTGACCCGGATGGTATCCTGGTTGTACGTCGGGATATTTCCTCTACGGGTAAAAGCATCAT
TCGCGTGAATGGCCAGCTAATTACGTTAGCCATGTTACGAGAATTAGGACCGTGGCTGGTAAACGTTCACGGTCAGCATG
ATCATCAGGCGCTTATGCAATCAGATAAGCATATTCGCTGGCTCGATGCTTATGGAGAATCTCGCTTGGCTGGAACAAAG
CAGGAATTTAGTCATTTATATCAAAAATATCGCAAAGCCGTGCAGGATTTATCAAGAATGGCTAAAAACGAGCGCGAATT
AATGCAGCGCATTGACCTATTAAGCTATCAGTTAAATGAAATTGAAGCGGCAAAATTAATCCCTGGTGAAGACGAGAAGC
TCATACAGCAACGTAAGAAGTGGGCTAATATTGAAAAAATATTTGCTGGTGTACAGGATGCTTACATGTCCCTTTATGGA
GATCAGAGGGGACAAGATTGGCTAGGGCACGCTATGGGAGAATTGGAGCGGGTACAACAATATGATGAACAGCTAGTTCC
GATCGTAGAAACGATTCAAAGTGCCTATTATCAGGTAGAGGACACTGTTCAACAATTGCGTCATATAAAGGACCGTTTGG
ATTTTGATCCTGCTATCCTAGCTGAAGTAGAAGGCAGATTAGACCAATTATCTGGATTAAAGCGCAAGTATGGTAAGTCC
GTAGATGAGATTTTGGAATATGCAGCAGGCATACAGGATGAACTAGATGAAATCCAGCATTATGATGATCGTTTGCAACA
AATGGAAAAAACACTCCGGGAAGCCGAAGCTGATGTAGCTATTGAGGCGCTGGAATTAAGTACGCTCCGCCGTGAGTTAG
CAGTAGAGCTTGCTAACTTAATTGAGCATGAGCTAAAAGAATTGCATATGGAGCGAGCACGTTTTGCAATTGAGATTAAG
CATATTCCAGACGAGCGAGGTATTGAGGTTGAGGGGAATCGAGTTAGGGTGAGTTCTCGCGGGATTGATGAGATAGAATT
TTTGATTGCGCCGAACCCAGGTGAACCTCTGCGCCCCTTAACTAAGATTGCGTCTGGAGGGGAATTATCTCGTGTCATGC
TCGCGATTAAAAGCATACTAGCTACTACCGAGCAGGTGGGTACTCTGATCTTTGACGAGGTAGATACGGGTGTAAGCGGT
CGAGCTGCTCAAGCTATTGCGGAAAAATTGGCACGAGTAGCGAAACATCGTCAAGTGCTATGTATTACGCATTTACCGCA
AGTAGCTTCTATGGCGGATGCCCATTTTTATATTCAAAAGCAGATGGATGAACAGGAGACCAGCACAACGGTTGTCCTCA
TGTCTTCGGAAGAGCGTGTGAACGAGCTTGCTCGTATGCTTGGCGGAGCTGAAGTTACAGAGAAAACAAAAGAACATGCT
AAGGAAATGATTCTCCTTGGAGAAGAGCGGAAAGCTGTCAATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.677

98.78

0.481

Multiple sequence alignment