Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   IF130_RS14195 Genome accession   NZ_CP061840
Coordinates   3178151..3179401 (+) Length   416 a.a.
NCBI ID   WP_015961780.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain AW-13-4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3173151..3184401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF130_RS14160 (IF130_14160) - 3173460..3173759 (-) 300 WP_011947628.1 helix-turn-helix transcriptional regulator -
  IF130_RS14165 (IF130_14165) - 3174012..3174356 (-) 345 WP_014844809.1 hypothetical protein -
  IF130_RS14170 (IF130_14170) - 3174473..3175102 (+) 630 WP_010948424.1 trimeric intracellular cation channel family protein -
  IF130_RS14175 (IF130_14175) - 3175312..3175806 (-) 495 WP_014844810.1 peptidylprolyl isomerase -
  IF130_RS14180 (IF130_14180) tgt 3175833..3176984 (-) 1152 WP_015961779.1 tRNA guanosine(34) transglycosylase Tgt -
  IF130_RS14185 (IF130_14185) - 3177046..3177537 (-) 492 WP_014844812.1 disulfide bond formation protein B -
  IF130_RS14190 (IF130_14190) - 3177534..3177962 (-) 429 WP_014842763.1 cytochrome c5 family protein -
  IF130_RS14195 (IF130_14195) cqsA 3178151..3179401 (+) 1251 WP_015961780.1 quorum-sensing autoinducer LAI-1 synthase LqsA Regulator
  IF130_RS14200 (IF130_14200) - 3179482..3180507 (-) 1026 WP_010948430.1 response regulator -
  IF130_RS14205 (IF130_14205) - 3180788..3181351 (+) 564 WP_015961781.1 HdeD family acid-resistance protein -
  IF130_RS14210 (IF130_14210) - 3181439..3182728 (-) 1290 WP_010948432.1 HAMP domain-containing sensor histidine kinase -
  IF130_RS14215 (IF130_14215) - 3182916..3183077 (+) 162 WP_021437214.1 hypothetical protein -
  IF130_RS14220 (IF130_14220) hemC 3183119..3184048 (+) 930 WP_015961782.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46089.57 Da        Isoelectric Point: 9.0911

>NTDB_id=423010 IF130_RS14195 WP_015961780.1 3178151..3179401(+) (cqsA) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
MSNTEYQTIDNETQYINGKEKHQNHAYPEYINHSMEKYYEGRVNKSWQGKHILKGKTPTANSLIFSSNDYLSISQHPQLI
KAQIAAMQKYGNGQMQSAVFLNNSSFLLSQCEKKFSSFLNYSAALLTQSGWSANVGLIQTLAKYNTPVYLDFYAHMSFWS
GVKAARAKPIPFLHNSVDSLKKRIEHHGPGIIAVDSIYSTLGTISPLADYADIARKFKCLLIVDESHSLGTHGSQGKGMV
AKLGLSSQIDIITASLAKALSGRGGIITGDRQLIEYIRYSSLPSIFSSALMPHDLAGFSASLEIITQEEWRRAKLQTNAD
FLREALSYEGINIGSSGSQIVPLVTGSEANTLWLRDELEKEDLFGAVFCSPATPKNKCLIRLSISANHEKSDLLRVIECL
AKLARKRPDIPLFKGN

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=423010 IF130_RS14195 WP_015961780.1 3178151..3179401(+) (cqsA) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
ATGAGCAATACAGAATACCAAACAATTGATAACGAGACTCAATACATCAATGGAAAAGAAAAACATCAAAACCATGCTTA
TCCTGAGTACATCAATCATTCCATGGAAAAATATTACGAGGGGCGAGTCAATAAATCCTGGCAAGGGAAACACATACTTA
AAGGCAAAACCCCGACTGCAAATTCACTGATTTTTTCGAGCAATGATTATTTAAGTATCAGTCAACATCCGCAATTAATT
AAAGCGCAAATTGCTGCGATGCAAAAATATGGTAATGGTCAAATGCAATCCGCTGTATTTTTAAATAACAGCTCTTTTTT
ACTCAGCCAATGTGAAAAGAAATTCAGTTCCTTTTTAAATTATTCTGCGGCCCTGCTCACTCAATCAGGCTGGAGCGCTA
ACGTTGGTCTCATACAAACCCTGGCCAAGTACAATACACCAGTGTATCTGGATTTTTATGCTCATATGTCTTTTTGGTCT
GGTGTAAAAGCAGCAAGAGCCAAACCTATACCTTTTCTACATAATTCAGTCGACTCACTAAAAAAACGAATTGAACACCA
TGGACCAGGAATAATTGCAGTAGATTCTATTTATAGTACGCTGGGTACGATTAGTCCATTGGCTGACTATGCTGACATTG
CAAGAAAATTCAAATGTTTACTCATCGTCGATGAATCTCATTCATTAGGTACGCATGGCTCGCAAGGCAAGGGAATGGTG
GCTAAACTGGGATTATCAAGCCAAATAGACATCATAACAGCAAGCCTGGCTAAAGCCTTATCAGGACGTGGAGGCATCAT
TACAGGAGATAGGCAACTTATAGAATATATCAGATATTCATCTCTGCCTTCTATTTTTAGTTCTGCTTTAATGCCTCATG
ATTTAGCAGGATTTAGCGCATCATTAGAAATTATTACTCAAGAAGAATGGAGAAGAGCAAAATTACAAACCAATGCTGAT
TTTTTACGAGAAGCCTTATCATACGAAGGAATTAATATAGGAAGTAGTGGCTCTCAAATAGTCCCTTTAGTTACAGGCAG
CGAGGCTAACACGCTTTGGTTAAGGGATGAGTTAGAAAAAGAAGACCTCTTTGGAGCCGTGTTCTGTTCACCCGCCACTC
CCAAAAATAAATGCCTGATTCGTTTATCCATCAGTGCGAATCACGAAAAATCGGACTTGCTCAGAGTGATTGAGTGCCTA
GCCAAACTTGCAAGAAAAAGACCCGATATTCCTTTGTTTAAGGGTAATTAA

Domains

Predicted by InterProScan.

Aminotransferase class I and II (Aminotran_1_2)

(63-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

45.43

89.423

0.406