Detailed information NTG0042300

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: WFL_RS15120
• Genome accession: NC_017664
• Coordinates: 3015857..3016849 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli W
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3010857..3021849

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WFL_RS15095 (WFL_14365)	ygbN	3011512..3012876 (+)	1365	WP_000104439.1	GntP family transporter	-
WFL_RS15100 (WFL_14370)	-	3012915..3013151 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
WFL_RS15105 (WFL_14375)	-	3013162..3014589 (-)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
WFL_RS15110 (WFL_14380)	-	3014589..3015182 (-)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
WFL_RS15115 (WFL_14385)	-	3015329..3015736 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
WFL_RS15120 (WFL_14390)	rpoS	3015857..3016849 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
WFL_RS15125 (WFL_14395)	nlpD	3016912..3018006 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
WFL_RS15130 (WFL_14400)	pcm	3018191..3018817 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
WFL_RS15135 (WFL_14405)	surE	3018811..3019572 (-)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
WFL_RS15140 (WFL_14410)	truD	3019553..3020602 (-)	1050	WP_000568949.1	tRNA pseudouridine(13) synthase TruD	-
WFL_RS15145 (WFL_14415)	ispF	3020599..3021078 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
WFL_RS15150 (WFL_14420)	ispD	3021078..3021788 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=42300 WFL_RS15120 WP_000081550.1 3015857..3016849(-) (rpoS) [Escherichia coli W]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=42300 WFL_RS15120 WP_000081550.1 3015857..3016849(-) (rpoS) [Escherichia coli W]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715