Detailed information NTG0422970

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IF130_RS06055
• Genome accession: NZ_CP061840
• Coordinates: 1327892..1328917 (+)
• Length: 341 a.a.
• NCBI ID: WP_011213596.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. pneumophila strain AW-13-4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1322892..1333917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IF130_RS06025 (IF130_06025)	-	1323324..1323641 (+)	318	WP_010947009.1	DUF2845 domain-containing protein	-
IF130_RS06030 (IF130_06030)	-	1323677..1324048 (+)	372	WP_011213591.1	protease inhibitor I42 family protein	-
IF130_RS06035 (IF130_06035)	-	1324105..1325820 (-)	1716	WP_011213592.1	NAD-dependent malic enzyme	-
IF130_RS06040 (IF130_06040)	-	1325900..1326283 (+)	384	WP_011213593.1	hypothetical protein	-
IF130_RS06045 (IF130_06045)	surE	1326286..1327044 (+)	759	WP_011213594.1	5'/3'-nucleotidase SurE	-
IF130_RS06050 (IF130_06050)	-	1327063..1327806 (+)	744	WP_011213595.1	peptidoglycan DD-metalloendopeptidase family protein	-
IF130_RS06055 (IF130_06055)	rpoS	1327892..1328917 (+)	1026	WP_011213596.1	RNA polymerase sigma factor RpoS	Regulator
IF130_RS06060 (IF130_06060)	hmgA	1329020..1330270 (-)	1251	WP_011213597.1	homogentisate 1,2-dioxygenase	-
IF130_RS06065 (IF130_06065)	-	1330417..1331160 (+)	744	WP_011213598.1	YebC/PmpR family DNA-binding transcriptional regulator	-
IF130_RS06070 (IF130_06070)	ruvC	1331160..1331684 (+)	525	WP_011213599.1	crossover junction endodeoxyribonuclease RuvC	-
IF130_RS06075 (IF130_06075)	ruvA	1331681..1332280 (+)	600	WP_011213600.1	Holliday junction branch migration protein RuvA	-
IF130_RS06080 (IF130_06080)	-	1332330..1332650 (+)	321	WP_011213601.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39433.70 Da
• Isoelectric Point: 4.3732

>NTDB_id=422970 IF130_RS06055 WP_011213596.1 1327892..1328917(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDIEPDIEKMEEELDELPEFTDDEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=422970 IF130_RS06055 WP_011213596.1 1327892..1328917(+) (rpoS) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAGGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGACTCTCTGTT
GTCAGAAGAGGATATTGAACCTGATATTGAAAAAATGGAAGAAGAGCTTGATGAACTTCCAGAGTTTACTGATGATGAAG
CTTTTCCTTCATTCCAGCGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACTTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACGGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTAAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAATTTGCGCCTGGTGGTTAAAATAGCCAGACGCTATCTTAATAGAGGATTACCTCTTCTGGATCTAATCG
AAGAGGGTAACCTGGGTTTAATGAAGTCTGTTGAGAAATTTGACCCCAAGCGAGGATTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACTATTGAGCGCGCAATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTCGTGAAAGA
ACTTAATGTTTATCTCAGAGCGGCAAGACAATTGACGCAAAAACTGGATCATGAACCATCACCTGAAGAAATAGCAGAAA
TGGTGGATAAGCCTTTGGAGGATGTCCAAAAATTATTGGGATTGAATGATAAAGTCGCTTCAGTTGATACTCCAATTGGA
TTTGATGAAACCAAATCTTTATTAGATACAATTGCTGATGAAAACAGTTTAAATCCTGCAGAGCTGCTAACCAATGAGAA
TTTAAGGCAGCATATAGAATCTCTTCTGGATAAATTAACTGAGAATCAACAGCAGGTTATCGCAAGACGTTTTGGGTTAA
GAGGTTTTGAAAAAGCGACACTGGAAGACGTTGGTAAGGAAATTGATTTGACCCGAGAACGCGTTCGCCAAATTCAAGTT
GAAGCTTTGAAGACACTTAGAACTTTGTTAGAGCGGGTTGGACTAACACAAGAGGATTTGTTTTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548