Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LRC_RS04185 Genome accession   NC_015975
Coordinates   819127..820932 (+) Length   601 a.a.
NCBI ID   WP_014073270.1    Uniprot ID   -
Organism   Ligilactobacillus ruminis ATCC 27782     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 814127..825932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRC_RS04160 (LRC_07610) nrdG 814844..815530 (+) 687 WP_014073265.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  LRC_RS04165 (LRC_07620) - 815807..816367 (-) 561 WP_014073266.1 M15 family metallopeptidase -
  LRC_RS04170 (LRC_07630) spxA 816682..817080 (+) 399 WP_014073267.1 transcriptional regulator SpxA -
  LRC_RS04175 (LRC_07640) - 817193..817969 (+) 777 WP_014073268.1 adaptor protein MecA -
  LRC_RS04180 (LRC_07650) - 818085..819044 (+) 960 WP_074786575.1 competence protein CoiA -
  LRC_RS04185 (LRC_07660) pepF 819127..820932 (+) 1806 WP_014073270.1 oligoendopeptidase F Regulator
  LRC_RS04190 (LRC_07670) - 820973..821620 (-) 648 WP_014073271.1 ClpXP adapter SpxH family protein -
  LRC_RS04195 (LRC_07680) - 821946..822635 (+) 690 WP_014073272.1 GTP pyrophosphokinase -
  LRC_RS04200 (LRC_07690) - 822632..823438 (+) 807 WP_014073273.1 NAD kinase -
  LRC_RS04205 (LRC_07700) - 823428..824333 (+) 906 WP_014073274.1 RluA family pseudouridine synthase -
  LRC_RS04210 (LRC_07710) mgtE 824339..825709 (+) 1371 WP_014073275.1 magnesium transporter -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 69491.79 Da        Isoelectric Point: 4.7587

>NTDB_id=42296 LRC_RS04185 WP_014073270.1 819127..820932(+) (pepF) [Ligilactobacillus ruminis ATCC 27782]
MAEVKQLPKREEVPVELTWDLTKIYATDTDFEADFAKVKKEAESFKKYQGKLKENGDTLLEAIKEMFAIQRRLENVYVYA
SMKNDQDTANAENQAKNATVQKLVAEVSEKLSWFQPELLHLTIEELEEAKKQTPELNEYSQNLREWFEMKDHVLSDKEEA
LLAGASDIFSAPESTFEVLNDADLKFPVMKDENGDDVELSEGIYGTLLESTDRRVRKEAFQNLYKVYRQFRHTFAMTLSS
HNRTENYVAKVRNYSTAQEAALANNHIPVSVYDTLINVTNKHLPLLHRYVALRKKLLNLDEVHMYDLYTPIAGEPTLKYT
YDEAKEEALKALAVLGDDYLSHVKEAFDNRWIDVVANQGKRGGAYSGGSYDTAPYILLNWQDTLDNLFTLVHEMGHTIHS
YYTRHNQPYQYGDYSIFVAEIASTTNENLLTQYLLDHFEDKKVKAYVLNHYLDGFKGTVFRQTQFAEFEKWSHEQDAAGK
PLTADVISKYYGELNKRYYGPDIFNDDEISLEWARIPHFYYNYYVYQYATGFAAATTLAQNILNDNPADTQAYLTYLKSG
SSEYPIDIMKKAGVDMTNEEYLEKAFDVFEKRLNELEKLIG

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=42296 LRC_RS04185 WP_014073270.1 819127..820932(+) (pepF) [Ligilactobacillus ruminis ATCC 27782]
ATGGCTGAAGTAAAACAACTTCCAAAACGTGAAGAAGTTCCGGTTGAACTGACATGGGATCTTACGAAAATTTATGCTAC
GGATACGGACTTCGAAGCAGATTTTGCCAAAGTAAAAAAAGAAGCGGAGAGCTTCAAAAAATATCAGGGCAAGCTTAAGG
AAAACGGAGATACCTTGCTCGAAGCAATTAAAGAAATGTTTGCGATTCAAAGGCGTCTTGAGAATGTTTATGTTTATGCA
AGCATGAAGAATGATCAAGATACTGCCAATGCTGAAAATCAAGCCAAGAACGCAACCGTTCAAAAACTTGTGGCCGAAGT
TTCGGAAAAACTTTCCTGGTTTCAACCGGAGCTCTTGCATTTGACGATTGAAGAGCTTGAGGAGGCAAAGAAGCAGACAC
CGGAACTTAACGAATATTCACAAAATCTCAGAGAATGGTTTGAGATGAAAGATCACGTCTTAAGCGACAAAGAAGAAGCA
TTGCTTGCCGGTGCGAGCGACATCTTCAGTGCACCTGAAAGCACTTTTGAAGTTTTGAACGATGCTGATTTGAAATTCCC
TGTCATGAAGGATGAAAACGGTGATGACGTTGAGCTTTCAGAAGGGATCTACGGAACGTTGCTCGAATCGACGGATCGTC
GCGTTCGCAAAGAAGCTTTCCAAAATTTGTATAAGGTTTATCGCCAGTTTCGTCATACGTTTGCTATGACGTTGTCTTCA
CACAACAGGACTGAAAATTACGTTGCCAAAGTCAGAAATTACTCAACGGCACAAGAGGCCGCTTTGGCAAACAATCACAT
CCCGGTCTCTGTTTATGATACGCTTATCAATGTAACGAATAAGCATTTGCCTTTACTGCATCGCTACGTTGCGCTCAGGA
AGAAATTGCTCAATCTTGACGAGGTGCATATGTATGATCTGTATACGCCGATCGCGGGCGAGCCGACCCTCAAATATACG
TATGATGAAGCCAAGGAAGAAGCATTAAAAGCATTGGCTGTTTTAGGTGACGATTATCTTTCTCACGTTAAAGAAGCTTT
TGACAATCGTTGGATTGACGTTGTGGCAAATCAGGGCAAGCGTGGCGGAGCGTACTCTGGCGGATCTTACGATACTGCCC
CGTACATTTTGCTCAATTGGCAGGATACGCTTGATAATTTGTTTACGCTTGTACATGAAATGGGACATACGATTCACAGC
TACTATACTCGTCATAATCAACCTTATCAATACGGGGATTATTCAATTTTTGTTGCTGAAATTGCTTCAACGACAAACGA
AAACCTATTGACGCAATATTTGCTTGATCATTTTGAAGACAAAAAAGTTAAAGCATATGTTTTAAATCACTATCTCGATG
GTTTCAAGGGAACGGTTTTCCGTCAGACGCAATTTGCTGAATTTGAAAAATGGTCCCATGAACAAGACGCTGCAGGCAAG
CCGCTGACTGCCGATGTTATCAGCAAGTACTATGGCGAGCTAAATAAGCGTTACTACGGGCCTGATATTTTTAATGACGA
TGAAATTTCTCTTGAATGGGCACGAATTCCTCATTTTTACTACAATTATTACGTCTATCAATATGCAACGGGATTTGCTG
CTGCAACGACTTTGGCACAAAATATCCTAAATGATAATCCTGCCGATACGCAAGCATATCTGACATATTTGAAGTCAGGA
TCGAGCGAATATCCAATTGACATCATGAAAAAAGCTGGCGTTGATATGACGAATGAAGAGTATCTTGAAAAAGCATTTGA
CGTCTTTGAAAAGCGACTGAATGAATTGGAGAAACTCATTGGTTGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.976

98.336

0.531

Multiple sequence alignment