Detailed information NTG0422920

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IFJ77_RS19195
• Genome accession: NZ_CP061780
• Coordinates: 4111446..4112450 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain ZBX-P11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4106446..4117450

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IFJ77_RS19165 (IFJ77_19165)	fghA	4106538..4107389 (+)	852	WP_003163269.1	S-formylglutathione hydrolase	-
IFJ77_RS19170 (IFJ77_19170)	ispF	4107460..4107933 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IFJ77_RS19175 (IFJ77_19175)	truD	4107930..4108997 (+)	1068	WP_023100864.1	tRNA pseudouridine(13) synthase TruD	-
IFJ77_RS19180 (IFJ77_19180)	surE	4108985..4109734 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
IFJ77_RS19185 (IFJ77_19185)	-	4109767..4110402 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IFJ77_RS19190 (IFJ77_19190)	-	4110448..4111341 (+)	894	WP_021265159.1	peptidoglycan DD-metalloendopeptidase family protein	-
IFJ77_RS19195 (IFJ77_19195)	rpoS	4111446..4112450 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
IFJ77_RS19200 (IFJ77_19200)	fdxA	4112877..4113200 (-)	324	WP_003092272.1	ferredoxin FdxA	-
IFJ77_RS19205 (IFJ77_19205)	mutS	4113267..4115834 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
IFJ77_RS19210 (IFJ77_19210)	-	4115960..4116967 (-)	1008	WP_021265158.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=422920 IFJ77_RS19195 WP_003113871.1 4111446..4112450(+) (rpoS) [Pseudomonas aeruginosa strain ZBX-P11]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=422920 IFJ77_RS19195 WP_003113871.1 4111446..4112450(+) (rpoS) [Pseudomonas aeruginosa strain ZBX-P11]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653