Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G4D19_RS16880 Genome accession   NZ_CP048778
Coordinates   3387937..3388533 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain EGKP7     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3382937..3393533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4D19_RS16865 (G4D19_17125) helD 3383145..3385199 (-) 2055 WP_004224033.1 DNA helicase IV -
  G4D19_RS16870 (G4D19_17130) - 3385324..3385770 (+) 447 WP_004224032.1 YccF domain-containing protein -
  G4D19_RS16875 (G4D19_17135) yccS 3385788..3387923 (+) 2136 WP_002898422.1 YccS family putative transporter -
  G4D19_RS16880 (G4D19_17140) sxy/tfoX 3387937..3388533 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  G4D19_RS16885 (G4D19_17145) sulA 3388882..3389391 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  G4D19_RS16890 (G4D19_17150) ompA 3389744..3390814 (+) 1071 WP_002898408.1 porin OmpA -
  G4D19_RS16895 (G4D19_17155) matP 3390945..3391397 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  G4D19_RS16900 (G4D19_17160) - 3391583..3393340 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=422913 G4D19_RS16880 WP_004179217.1 3387937..3388533(-) (sxy/tfoX) [Klebsiella pneumoniae strain EGKP7]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=422913 G4D19_RS16880 WP_004179217.1 3387937..3388533(-) (sxy/tfoX) [Klebsiella pneumoniae strain EGKP7]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51

Multiple sequence alignment