Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   IFJ77_RS12080 Genome accession   NZ_CP061780
Coordinates   2589702..2590727 (+) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain ZBX-P11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2584702..2595727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFJ77_RS12055 (IFJ77_12055) - 2584892..2585209 (-) 318 WP_003097288.1 tetratricopeptide repeat protein -
  IFJ77_RS12060 (IFJ77_12060) trkA 2585357..2586730 (-) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  IFJ77_RS12065 (IFJ77_12065) rsmB 2586757..2588061 (-) 1305 WP_023100691.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  IFJ77_RS12070 (IFJ77_12070) fmt 2588058..2589002 (-) 945 WP_023100692.1 methionyl-tRNA formyltransferase -
  IFJ77_RS12075 (IFJ77_12075) def 2589057..2589563 (-) 507 WP_003097293.1 peptide deformylase -
  IFJ77_RS12080 (IFJ77_12080) tsaP 2589702..2590727 (+) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  IFJ77_RS12085 (IFJ77_12085) dprA 2590862..2591950 (+) 1089 WP_023100693.1 DNA-processing protein DprA Machinery gene
  IFJ77_RS12090 (IFJ77_12090) - 2591991..2592548 (+) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  IFJ77_RS12095 (IFJ77_12095) - 2592558..2593535 (-) 978 WP_023100694.1 NADPH:quinone reductase -
  IFJ77_RS12100 (IFJ77_12100) hemF 2593726..2594643 (+) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  IFJ77_RS12105 (IFJ77_12105) aroE 2594701..2595525 (+) 825 WP_003097314.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=422902 IFJ77_RS12080 WP_003097294.1 2589702..2590727(+) (tsaP) [Pseudomonas aeruginosa strain ZBX-P11]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=422902 IFJ77_RS12080 WP_003097294.1 2589702..2590727(+) (tsaP) [Pseudomonas aeruginosa strain ZBX-P11]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTTTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCTATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393