Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   G3T50_RS03560 Genome accession   NZ_CP048771
Coordinates   659342..659779 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain ZS007     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 654342..664779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T50_RS03540 (G3T50_03515) - 654832..656508 (+) 1677 WP_251825653.1 DUF4118 domain-containing protein -
  G3T50_RS09635 - 656502..656654 (+) 153 WP_224374383.1 hypothetical protein -
  G3T50_RS03545 (G3T50_03520) uvrB 656756..658729 (-) 1974 WP_032584670.1 excinuclease ABC subunit UvrB -
  G3T50_RS03550 (G3T50_03525) - 658883..659113 (+) 231 WP_002852327.1 hypothetical protein -
  G3T50_RS03555 (G3T50_03530) - 659103..659345 (+) 243 WP_002854947.1 hypothetical protein -
  G3T50_RS03560 (G3T50_03535) Cj0683 659342..659779 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  G3T50_RS03565 (G3T50_03540) priA 659761..661614 (+) 1854 WP_167842734.1 primosomal protein N' -
  G3T50_RS03570 (G3T50_03545) cipA 661624..663018 (-) 1395 WP_052948954.1 DUF2972 domain-containing protein -
  G3T50_RS03575 (G3T50_03550) ispG 663164..664237 (+) 1074 WP_002852250.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=422858 G3T50_RS03560 WP_002852324.1 659342..659779(+) (Cj0683) [Campylobacter jejuni strain ZS007]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=422858 G3T50_RS03560 WP_002852324.1 659342..659779(+) (Cj0683) [Campylobacter jejuni strain ZS007]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment