Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   G3R55_RS03235 Genome accession   NZ_CP048769
Coordinates   616767..617204 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain ZJB020     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 611767..622204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3R55_RS08510 - 612385..612894 (+) 510 Protein_622 sensor histidine kinase KdpD -
  G3R55_RS08515 - 612916..614079 (+) 1164 WP_251823138.1 DUF4118 domain-containing protein -
  G3R55_RS03220 (G3R55_03225) uvrB 614181..616154 (-) 1974 WP_002860008.1 excinuclease ABC subunit UvrB -
  G3R55_RS03225 (G3R55_03230) - 616308..616538 (+) 231 WP_002852327.1 hypothetical protein -
  G3R55_RS03230 (G3R55_03235) - 616528..616770 (+) 243 WP_002854947.1 hypothetical protein -
  G3R55_RS03235 (G3R55_03240) Cj0683 616767..617204 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  G3R55_RS03240 (G3R55_03245) priA 617186..619039 (+) 1854 WP_002860009.1 primosomal protein N' -
  G3R55_RS03245 (G3R55_03250) cipA 619049..620443 (-) 1395 WP_052948954.1 DUF2972 domain-containing protein -
  G3R55_RS03250 (G3R55_03255) ispG 620589..621662 (+) 1074 WP_002852250.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=422831 G3R55_RS03235 WP_002852324.1 616767..617204(+) (Cj0683) [Campylobacter jejuni strain ZJB020]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=422831 G3R55_RS03235 WP_002852324.1 616767..617204(+) (Cj0683) [Campylobacter jejuni strain ZJB020]
ATGAACAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment