Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   G3T43_RS06975 Genome accession   NZ_CP048767
Coordinates   1363261..1363572 (-) Length   103 a.a.
NCBI ID   WP_002880445.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB021     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1358261..1368572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T43_RS06955 (G3T43_06960) ctsE 1359130..1360689 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  G3T43_RS06960 (G3T43_06965) ctsX 1360679..1361266 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  G3T43_RS06965 (G3T43_06970) ctsP 1361270..1361878 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  G3T43_RS06970 (G3T43_06975) ctsD 1361871..1363283 (-) 1413 WP_002880444.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  G3T43_RS06975 (G3T43_06980) ctsR 1363261..1363572 (-) 312 WP_002880445.1 hypothetical protein Machinery gene
  G3T43_RS06980 (G3T43_06985) nifJ 1363596..1367156 (-) 3561 WP_167861814.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  G3T43_RS06985 (G3T43_06990) - 1367249..1367890 (-) 642 WP_052801469.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12450.33 Da        Isoelectric Point: 5.7333

>NTDB_id=422822 G3T43_RS06975 WP_002880445.1 1363261..1363572(-) (ctsR) [Campylobacter jejuni strain ZJB021]
MCFSTLFAQDNFEEYFKLIDKENRIDFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=422822 G3T43_RS06975 WP_002880445.1 1363261..1363572(-) (ctsR) [Campylobacter jejuni strain ZJB021]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAGATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment