Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   G3T44_RS06960 Genome accession   NZ_CP048765
Coordinates   1357943..1359124 (-) Length   393 a.a.
NCBI ID   WP_032584551.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZJB023     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1352943..1364124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T44_RS06930 (G3T44_06925) - 1353487..1353828 (+) 342 WP_002784057.1 hypothetical protein -
  G3T44_RS06935 (G3T44_06930) flgM 1353891..1354088 (+) 198 WP_002872343.1 flagellar biosynthesis anti-sigma factor FlgM -
  G3T44_RS06940 (G3T44_06935) - 1354131..1354565 (+) 435 WP_002779263.1 flagellar protein FlgN -
  G3T44_RS06945 (G3T44_06940) flgK 1354575..1356401 (+) 1827 WP_002867248.1 flagellar hook-associated protein FlgK -
  G3T44_RS06950 (G3T44_06945) - 1356418..1357182 (+) 765 WP_002851318.1 TIGR02757 family protein -
  G3T44_RS06955 (G3T44_06950) - 1357186..1357950 (+) 765 WP_002860344.1 TSUP family transporter -
  G3T44_RS06960 (G3T44_06955) ctsF 1357943..1359124 (-) 1182 WP_032584551.1 type II secretion system F family protein Machinery gene
  G3T44_RS06965 (G3T44_06960) ctsE 1359121..1360680 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  G3T44_RS06970 (G3T44_06965) ctsX 1360670..1361257 (-) 588 WP_002934760.1 hypothetical protein Machinery gene
  G3T44_RS06975 (G3T44_06970) ctsP 1361261..1361869 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  G3T44_RS06980 (G3T44_06975) ctsD 1361862..1363274 (-) 1413 WP_002880444.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  G3T44_RS06985 (G3T44_06980) ctsR 1363252..1363563 (-) 312 WP_002880445.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45744.32 Da        Isoelectric Point: 9.2580

>NTDB_id=422790 G3T44_RS06960 WP_032584551.1 1357943..1359124(-) (ctsF) [Campylobacter jejuni strain ZJB023]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHAMLEIYNFLDDYGIFCIFLFVIFNVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFINSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=422790 G3T44_RS06960 WP_032584551.1 1357943..1359124(-) (ctsF) [Campylobacter jejuni strain ZJB023]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAGGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGGTTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGTGAGTTTGCCTTTTATCACGCATGCAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTAATGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAAATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.214

99.746

0.98

Multiple sequence alignment