Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   IFJ78_RS04880 Genome accession   NZ_CP061779
Coordinates   1041673..1042002 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain ZBX-P12     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1036673..1047002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IFJ78_RS04865 (IFJ78_04865) - 1037288..1038250 (+) 963 WP_016253165.1 SDR family oxidoreductase -
  IFJ78_RS04870 (IFJ78_04870) - 1038250..1039287 (+) 1038 WP_003452706.1 glycosyltransferase family 4 protein -
  IFJ78_RS04875 (IFJ78_04875) - 1039485..1041482 (+) 1998 WP_003122257.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  IFJ78_RS04880 (IFJ78_04880) comEA/comE1 1041673..1042002 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  IFJ78_RS04890 (IFJ78_04890) - 1042219..1043415 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  IFJ78_RS04895 (IFJ78_04895) uvrB 1043603..1045615 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=422754 IFJ78_RS04880 WP_003104586.1 1041673..1042002(+) (comEA/comE1) [Pseudomonas aeruginosa strain ZBX-P12]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=422754 IFJ78_RS04880 WP_003104586.1 1041673..1042002(+) (comEA/comE1) [Pseudomonas aeruginosa strain ZBX-P12]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAATTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment