Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   G3T46_RS07315 Genome accession   NZ_CP048763
Coordinates   1404316..1405497 (-) Length   393 a.a.
NCBI ID   WP_002851165.1    Uniprot ID   Q7WYI5
Organism   Campylobacter jejuni strain ZH006     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1399316..1410497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T46_RS07285 (G3T46_07280) - 1399858..1400199 (+) 342 WP_002784057.1 hypothetical protein -
  G3T46_RS07290 (G3T46_07285) flgM 1400262..1400459 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  G3T46_RS07295 (G3T46_07290) - 1400504..1400938 (+) 435 WP_002826016.1 flagellar protein FlgN -
  G3T46_RS07300 (G3T46_07295) flgK 1400948..1402774 (+) 1827 WP_002867029.1 flagellar hook-associated protein FlgK -
  G3T46_RS07305 (G3T46_07300) - 1402791..1403555 (+) 765 WP_167843237.1 TIGR02757 family protein -
  G3T46_RS07310 (G3T46_07305) - 1403559..1404323 (+) 765 WP_002867032.1 TSUP family transporter -
  G3T46_RS07315 (G3T46_07310) ctsF 1404316..1405497 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  G3T46_RS07320 (G3T46_07315) ctsE 1405494..1407053 (-) 1560 WP_167843238.1 GspE/PulE family protein Machinery gene
  G3T46_RS07325 (G3T46_07320) ctsX 1407043..1407630 (-) 588 WP_126211804.1 transformation system protein Machinery gene
  G3T46_RS07330 (G3T46_07325) ctsP 1407634..1408242 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  G3T46_RS07335 (G3T46_07330) ctsD 1408235..1409647 (-) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  G3T46_RS07340 (G3T46_07335) ctsR 1409625..1409936 (-) 312 WP_002880445.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45764.35 Da        Isoelectric Point: 9.0938

>NTDB_id=422736 G3T46_RS07315 WP_002851165.1 1404316..1405497(-) (ctsF) [Campylobacter jejuni strain ZH006]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=422736 G3T46_RS07315 WP_002851165.1 1404316..1405497(-) (ctsF) [Campylobacter jejuni strain ZH006]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

99.746

0.99

Multiple sequence alignment