Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   G3T47_RS06825 Genome accession   NZ_CP048761
Coordinates   1307505..1308473 (+) Length   322 a.a.
NCBI ID   WP_002865440.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS004     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1302505..1313473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T47_RS06800 (G3T47_06800) cdsA 1303415..1304140 (-) 726 WP_057032776.1 phosphatidate cytidylyltransferase -
  G3T47_RS06805 (G3T47_06805) - 1304149..1304487 (-) 339 WP_002852397.1 hypothetical protein -
  G3T47_RS06810 (G3T47_06810) - 1304489..1305796 (-) 1308 WP_126204217.1 NFACT family protein -
  G3T47_RS06815 (G3T47_06815) mobA 1305858..1306433 (+) 576 WP_002858185.1 molybdenum cofactor guanylyltransferase -
  G3T47_RS06820 (G3T47_06820) pldA 1306430..1307419 (+) 990 WP_167844488.1 phospholipase A -
  G3T47_RS06825 (G3T47_06825) ceuB 1307505..1308473 (+) 969 WP_002865440.1 ABC transporter permease Machinery gene
  G3T47_RS06830 (G3T47_06830) ceuC 1308466..1309404 (+) 939 WP_057096249.1 iron chelate uptake ABC transporter family permease subunit -
  G3T47_RS06835 (G3T47_06835) ceuD 1309401..1310156 (+) 756 WP_002871403.1 ABC transporter ATP-binding protein -
  G3T47_RS06840 (G3T47_06840) ceuB 1310169..1311161 (+) 993 WP_044306199.1 enterochelin ABC transporter substrate-binding protein CeuB -
  G3T47_RS06850 (G3T47_06850) - 1311387..1311941 (-) 555 WP_002867306.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35439.37 Da        Isoelectric Point: 9.6678

>NTDB_id=422706 G3T47_RS06825 WP_002865440.1 1307505..1308473(+) (ceuB) [Campylobacter jejuni strain ZS004]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=422706 G3T47_RS06825 WP_002865440.1 1307505..1308473(+) (ceuB) [Campylobacter jejuni strain ZS004]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTAATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGGTCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994

Multiple sequence alignment