Detailed information NTG0422702

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IFJ79_RS14815
• Genome accession: NZ_CP061778
• Coordinates: 3174118..3175122 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain ZBX-P13
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3169118..3180122

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IFJ79_RS14785 (IFJ79_14790)	fghA	3169210..3170061 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
IFJ79_RS14790 (IFJ79_14795)	ispF	3170132..3170605 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IFJ79_RS14795 (IFJ79_14800)	truD	3170602..3171669 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
IFJ79_RS14800 (IFJ79_14805)	surE	3171657..3172406 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
IFJ79_RS14805 (IFJ79_14810)	-	3172439..3173074 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IFJ79_RS14810 (IFJ79_14815)	-	3173120..3174013 (+)	894	WP_033991080.1	peptidoglycan DD-metalloendopeptidase family protein	-
IFJ79_RS14815 (IFJ79_14820)	rpoS	3174118..3175122 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
IFJ79_RS14820 (IFJ79_14825)	fdxA	3175549..3175872 (-)	324	WP_003092272.1	ferredoxin FdxA	-
IFJ79_RS14825 (IFJ79_14830)	mutS	3175939..3178506 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
IFJ79_RS14830 (IFJ79_14835)	-	3178632..3179639 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=422702 IFJ79_RS14815 WP_003113871.1 3174118..3175122(+) (rpoS) [Pseudomonas aeruginosa strain ZBX-P13]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=422702 IFJ79_RS14815 WP_003113871.1 3174118..3175122(+) (rpoS) [Pseudomonas aeruginosa strain ZBX-P13]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653