Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   G3T48_RS07350 Genome accession   NZ_CP048760
Coordinates   1416253..1417434 (-) Length   393 a.a.
NCBI ID   WP_002880441.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS005     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1411253..1422434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T48_RS07320 (G3T48_07320) - 1411795..1412136 (+) 342 WP_002784057.1 hypothetical protein -
  G3T48_RS07325 (G3T48_07325) flgM 1412199..1412396 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  G3T48_RS07330 (G3T48_07330) - 1412441..1412875 (+) 435 WP_002826016.1 flagellar protein FlgN -
  G3T48_RS07335 (G3T48_07335) flgK 1412885..1414711 (+) 1827 WP_167840753.1 flagellar hook-associated protein FlgK -
  G3T48_RS07340 (G3T48_07340) - 1414728..1415492 (+) 765 WP_057031585.1 TIGR02757 family protein -
  G3T48_RS07345 (G3T48_07345) - 1415496..1416260 (+) 765 WP_002855821.1 TSUP family transporter -
  G3T48_RS07350 (G3T48_07350) ctsF 1416253..1417434 (-) 1182 WP_002880441.1 type II secretion system F family protein Machinery gene
  G3T48_RS07355 (G3T48_07355) ctsE 1417431..1418990 (-) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene
  G3T48_RS07360 (G3T48_07360) ctsX 1418980..1419567 (-) 588 WP_126211804.1 transformation system protein Machinery gene
  G3T48_RS07365 (G3T48_07365) ctsP 1419571..1420179 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  G3T48_RS07370 (G3T48_07370) ctsD 1420172..1421584 (-) 1413 WP_044260333.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  G3T48_RS07375 (G3T48_07375) ctsR 1421562..1421873 (-) 312 WP_002880445.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45742.39 Da        Isoelectric Point: 9.0938

>NTDB_id=422682 G3T48_RS07350 WP_002880441.1 1416253..1417434(-) (ctsF) [Campylobacter jejuni strain ZS005]
MKFYEVEFLKNNQNYTKTIKAENLNIAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=422682 G3T48_RS07350 WP_002880441.1 1416253..1417434(-) (ctsF) [Campylobacter jejuni strain ZS005]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATATAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGGAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.724

99.746

0.985

Multiple sequence alignment