Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   G3T48_RS05535 Genome accession   NZ_CP048760
Coordinates   1067224..1068183 (+) Length   319 a.a.
NCBI ID   WP_087695967.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS005     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1047043..1077521 1067224..1068183 within 0


Gene organization within MGE regions


Location: 1047043..1077521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T48_RS05425 (G3T48_05430) pglI 1047043..1047972 (-) 930 WP_002866141.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  G3T48_RS05430 (G3T48_05435) pglH 1047965..1049044 (-) 1080 WP_167840656.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  G3T48_RS05435 (G3T48_05440) pglK 1049041..1050735 (-) 1695 WP_167840657.1 ABC-type lipopolysaccharide transporter PglK -
  G3T48_RS05440 (G3T48_05445) galE 1050729..1051715 (-) 987 WP_002874249.1 UDP-glucose 4-epimerase GalE -
  G3T48_RS05445 (G3T48_05450) - 1051773..1052567 (-) 795 WP_002935018.1 3'-5' exonuclease -
  G3T48_RS05450 (G3T48_05455) waaC 1052633..1053661 (+) 1029 WP_044260507.1 lipopolysaccharide heptosyltransferase I -
  G3T48_RS05455 (G3T48_05460) htrB 1053651..1054529 (+) 879 WP_167840658.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  G3T48_RS05460 (G3T48_05465) - 1054526..1055227 (+) 702 WP_002902664.1 glycosyltransferase family 2 protein -
  G3T48_RS05465 - 1055220..1055564 (-) 345 WP_167840808.1 glycosyltransferase -
  G3T48_RS05470 (G3T48_05470) - 1055536..1056291 (-) 756 WP_167840659.1 glycosyltransferase -
  G3T48_RS05475 (G3T48_05475) - 1056272..1057051 (-) 780 WP_167840660.1 glycosyltransferase family 25 protein -
  G3T48_RS08945 (G3T48_05480) - 1057048..1057983 (-) 936 WP_126204106.1 glycosyltransferase family 2 protein -
  G3T48_RS05485 (G3T48_05485) - 1058256..1059191 (-) 936 WP_167840661.1 glycosyltransferase family 2 protein -
  G3T48_RS05490 (G3T48_05490) - 1059185..1059454 (-) 270 WP_126204105.1 hypothetical protein -
  G3T48_RS09025 (G3T48_05495) - 1059556..1060491 (-) 936 WP_126204104.1 glycosyltransferase family 2 protein -
  G3T48_RS05500 (G3T48_05500) - 1060484..1061743 (-) 1260 WP_126204103.1 glycosyltransferase family 2 protein -
  G3T48_RS05505 (G3T48_05505) - 1061843..1062724 (+) 882 WP_167840809.1 alpha-2,3-sialyltransferase -
  G3T48_RS05510 (G3T48_05510) neuB 1062725..1063765 (+) 1041 WP_087695971.1 N-acetylneuraminate synthase -
  G3T48_RS05515 (G3T48_05515) neuC 1063762..1064880 (+) 1119 WP_087695970.1 UDP-N-acetylglucosamine 2-epimerase -
  G3T48_RS05520 (G3T48_05520) - 1064877..1065542 (+) 666 WP_087695969.1 acylneuraminate cytidylyltransferase family protein -
  G3T48_RS05525 (G3T48_05525) - 1065688..1066362 (+) 675 WP_251814092.1 CatB-related O-acetyltransferase -
  G3T48_RS05530 (G3T48_05530) waaV 1066354..1067165 (-) 812 Protein_1082 glycosyltransferase family 2 protein -
  G3T48_RS05535 (G3T48_05535) waaF 1067224..1068183 (+) 960 WP_087695967.1 lipopolysaccharide heptosyltransferase II Regulator
  G3T48_RS05540 (G3T48_05540) gmhA 1068164..1068724 (-) 561 WP_087695966.1 D-sedoheptulose 7-phosphate isomerase -
  G3T48_RS05545 (G3T48_05545) rfaE1 1068721..1070106 (-) 1386 WP_087695965.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  G3T48_RS05550 (G3T48_05550) rfaD 1070099..1071052 (-) 954 WP_002867398.1 ADP-glyceromanno-heptose 6-epimerase -
  G3T48_RS05555 (G3T48_05555) gmhB 1071053..1071614 (-) 562 Protein_1087 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  G3T48_RS05560 (G3T48_05560) - 1071695..1071997 (+) 303 WP_002852762.1 cytochrome c -
  G3T48_RS05565 (G3T48_05565) ccoS 1072021..1072227 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  G3T48_RS05570 (G3T48_05570) - 1072224..1074581 (-) 2358 WP_167840662.1 heavy metal translocating P-type ATPase -
  G3T48_RS05575 (G3T48_05575) rho 1074690..1075988 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  G3T48_RS05580 (G3T48_05580) dnaX 1075992..1077521 (+) 1530 WP_052781703.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36730.30 Da        Isoelectric Point: 10.3046

>NTDB_id=422674 G3T48_RS05535 WP_087695967.1 1067224..1068183(+) (waaF) [Campylobacter jejuni strain ZS005]
MKIFIHLPTWLGDAVMASPALCTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKTHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLTCMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=422674 G3T48_RS05535 WP_087695967.1 1067224..1068183(+) (waaF) [Campylobacter jejuni strain ZS005]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATGCACTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAAGCAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAACTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGTGATCTTTTCATCACAAACGACAGT
GGTCCTATGCACATAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACAAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGCATTTAGATCTAACTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.357

100

0.944

Multiple sequence alignment