Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   G3T51_RS12370 Genome accession   NZ_CP048732
Coordinates   2487334..2488305 (-) Length   323 a.a.
NCBI ID   WP_025905417.1    Uniprot ID   A0AAJ4SJJ8
Organism   Mammaliicoccus sciuri strain NWAF26     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2482334..2493305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T51_RS12345 - 2482609..2483130 (+) 522 WP_048539931.1 GrpB family protein -
  G3T51_RS12350 murB 2483200..2484117 (+) 918 WP_048539932.1 UDP-N-acetylmuramate dehydrogenase -
  G3T51_RS12355 - 2484442..2485479 (-) 1038 WP_048539933.1 siderophore ABC transporter substrate-binding protein -
  G3T51_RS12360 - 2485582..2486382 (-) 801 WP_058591622.1 ABC transporter ATP-binding protein -
  G3T51_RS12365 - 2486379..2487344 (-) 966 WP_048539935.1 iron chelate uptake ABC transporter family permease subunit -
  G3T51_RS12370 ceuB 2487334..2488305 (-) 972 WP_025905417.1 ABC transporter permease Machinery gene
  G3T51_RS12375 - 2488432..2488848 (-) 417 WP_048539936.1 FixH family protein -
  G3T51_RS12380 nrdF 2488998..2489969 (-) 972 WP_048539937.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  G3T51_RS12385 nrdE 2489998..2492103 (-) 2106 WP_048539938.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  G3T51_RS12390 nrdI 2492066..2492464 (-) 399 WP_025905413.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35476.97 Da        Isoelectric Point: 10.7243

>NTDB_id=422586 G3T51_RS12370 WP_025905417.1 2487334..2488305(-) (ceuB) [Mammaliicoccus sciuri strain NWAF26]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=422586 G3T51_RS12370 WP_025905417.1 2487334..2488305(-) (ceuB) [Mammaliicoccus sciuri strain NWAF26]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTGATTATTTTATTAGTAATTGCAACGTTCTTCTCTATATTTATAGGTGT
TTCAGAAGTAAAACCATTACATATATTAAATTTAACAGACGAACAGAAGAACATTTTAGTATCAAGTAGAATTCCGAGAA
CAGTCAGTATTATTATCTCAGGTAGCTCGTTAGCTATTTGTGGACTGATTATGCAACAGCTTACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCCAGATTAGGTATATTAATTTCTCTTATCGCTTTTCCAGAAGCCAACAT
ACTACTTAAATTATTATTTGCTACATTATTAAGTTTATTTGGAACAATGCTATTCATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTCATACCATTAGTTGGTATTATGCTCGGAAACATAGTGTCAAGTTTTTCTTCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGCGGTAGATATGAAATTCT
TTATATTAGTATTCCGTTATTGATTTTAGCATTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTTA
GTGTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGACTGATCATTGCCTCAATCATTACGGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGTTTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTAAAAAA
TGCATTGCCACATACAGCTGTATTTGGTGCATTGTTTGTCATGATTTGTGATGTAATAGGTCGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATTGGTGTGATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCAAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.104

98.142

0.502

Multiple sequence alignment