Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   G3G87_RS05740 Genome accession   NZ_CP048714
Coordinates   1204329..1205045 (-) Length   238 a.a.
NCBI ID   WP_002461418.1    Uniprot ID   -
Organism   Staphylococcus lugdunensis strain CGMH-SL36     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1199329..1210045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3G87_RS05720 - 1199384..1200628 (+) 1245 WP_002477917.1 ammonium transporter -
  G3G87_RS05725 - 1200728..1201678 (+) 951 WP_002461422.1 LacI family DNA-binding transcriptional regulator -
  G3G87_RS05730 - 1201778..1203262 (+) 1485 WP_002477918.1 sucrose-6-phosphate hydrolase -
  G3G87_RS05735 - 1203263..1204237 (+) 975 WP_002477919.1 carbohydrate kinase -
  G3G87_RS05740 agrA 1204329..1205045 (-) 717 WP_002461418.1 quorum-sensing response regulator AgrA Regulator
  G3G87_RS05745 agrC 1205058..1206347 (-) 1290 WP_002477920.1 quorum-sensing sensor histidine kinase AgrC -
  G3G87_RS05750 agrD 1206369..1206512 (-) 144 WP_002477921.1 cyclic lactone autoinducer peptide AgrD -
  G3G87_RS05755 - 1206515..1207081 (-) 567 WP_070817133.1 accessory gene regulator AgrB -
  G3G87_RS05760 - 1207709..1208494 (-) 786 WP_002477923.1 carbon-nitrogen family hydrolase -
  G3G87_RS05765 - 1208629..1209252 (-) 624 WP_002461413.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27935.92 Da        Isoelectric Point: 5.9140

>NTDB_id=422530 G3G87_RS05740 WP_002461418.1 1204329..1205045(-) (agrA) [Staphylococcus lugdunensis strain CGMH-SL36]
MKIYICEDDVKQRENMVEIINNYIMIEEKPMEIALATDNPYEILKMSKENEDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPAELKTRIIDCLETAHTRLKLLSKERTVETIELKRGSNSVYVQYDEVM
FFESSTNSHRLIAHLDNRQIEFYGNLKQISQIDDRFFRCHNSFVVNRHNISSINSKERVVYFKNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=422530 G3G87_RS05740 WP_002461418.1 1204329..1205045(-) (agrA) [Staphylococcus lugdunensis strain CGMH-SL36]
ATGAAGATTTACATTTGTGAAGATGATGTTAAACAACGTGAAAATATGGTTGAGATCATCAATAACTATATCATGATTGA
AGAAAAACCAATGGAAATTGCTTTAGCTACAGATAATCCTTATGAAATTTTAAAAATGTCAAAGGAAAATGAGGATGTTG
GTTGTTATTTTTTAGATATTCAATTAGAAGCTGACATAAACGGTATCAAGTTAGGTAGCGAAATAAGAAAGTATGATCCG
ATAGGTAACATAATTTTTGTTACAAGTCATAGTGAGCTGACATATTTAACTTTTGTTTACAAAGTATCGGCTATGGATTT
TATTTTTAAAGATGACCCTGCCGAACTTAAAACTCGTATTATCGATTGCCTTGAAACCGCACATACGCGCTTAAAGTTAT
TGTCAAAAGAACGTACCGTTGAAACGATAGAGCTTAAGCGCGGTAGTAATTCTGTATATGTGCAATATGATGAAGTGATG
TTTTTTGAATCATCAACAAATTCACATCGATTGATTGCACATTTAGATAATCGTCAAATTGAGTTTTATGGTAATCTAAA
ACAAATTAGTCAAATCGATGATCGTTTCTTTAGATGCCATAATAGTTTTGTTGTCAATCGACACAATATCTCTTCAATCA
ATTCAAAAGAACGTGTTGTATATTTTAAAAATGGTGAACATTGTTATGCATCAGTACGCAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

86.555

100

0.866

Multiple sequence alignment