Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ID627_RS09325 Genome accession   NZ_CP061764
Coordinates   1937567..1938991 (-) Length   474 a.a.
NCBI ID   WP_032176418.1    Uniprot ID   -
Organism   Escherichia coli O19:H7 strain 730V1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1932567..1943991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID627_RS09295 (ID627_09295) yeeZ 1932622..1933446 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  ID627_RS09300 (ID627_09300) yeeY 1933492..1934421 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  ID627_RS09305 (ID627_09305) yoeI 1934636..1934698 (+) 63 WP_010723108.1 membrane protein YoeI -
  ID627_RS09310 (ID627_09310) plaP 1934688..1936046 (+) 1359 WP_053274921.1 putrescine/proton symporter PlaP -
  ID627_RS09315 (ID627_09315) tsuA 1936225..1937283 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  ID627_RS09320 (ID627_09320) tsuB 1937297..1937524 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  ID627_RS09325 (ID627_09325) sbcB 1937567..1938991 (-) 1425 WP_032176418.1 exodeoxyribonuclease I Machinery gene
  ID627_RS09330 (ID627_09330) - 1939172..1940350 (+) 1179 WP_191113525.1 tyrosine-type recombinase/integrase -
  ID627_RS09335 (ID627_09335) - 1940331..1940522 (-) 192 WP_000132739.1 helix-turn-helix transcriptional regulator -
  ID627_RS09340 (ID627_09340) - 1940682..1941164 (-) 483 WP_086186016.1 hypothetical protein -
  ID627_RS09345 (ID627_09345) - 1941161..1941325 (-) 165 WP_001576836.1 DUF2737 family protein -
  ID627_RS09350 (ID627_09350) - 1941336..1941632 (-) 297 WP_191113526.1 phage anti-RecBCD protein -
  ID627_RS09355 (ID627_09355) - 1941656..1942039 (-) 384 WP_191113527.1 hypothetical protein -
  ID627_RS09360 (ID627_09360) - 1942039..1942644 (-) 606 WP_000031367.1 ERF family protein -
  ID627_RS09365 (ID627_09365) - 1942655..1942825 (-) 171 WP_000050554.1 hypothetical protein -
  ID627_RS09370 (ID627_09370) - 1942901..1943071 (-) 171 WP_001183771.1 hypothetical protein -
  ID627_RS09375 (ID627_09375) - 1943266..1943736 (-) 471 WP_000167585.1 hypothetical protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54381.63 Da        Isoelectric Point: 5.4700

>NTDB_id=422489 ID627_RS09325 WP_032176418.1 1937567..1938991(-) (sbcB) [Escherichia coli O19:H7 strain 730V1]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAIIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=422489 ID627_RS09325 WP_032176418.1 1937567..1938991(-) (sbcB) [Escherichia coli O19:H7 strain 730V1]
ATGACAGACACAGATAAGCAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCTATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCATAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

99.156

0.582

Multiple sequence alignment