Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   PARA_RS09910 Genome accession   NC_015964
Coordinates   2030339..2030605 (-) Length   88 a.a.
NCBI ID   WP_014065666.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae T3T1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2025339..2035605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PARA_RS09900 (PARA_19520) nrdR 2026415..2026864 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  PARA_RS09905 (PARA_19530) recC 2026942..2030301 (-) 3360 WP_014065665.1 exodeoxyribonuclease V subunit gamma -
  PARA_RS09910 (PARA_19540) comQ 2030339..2030605 (-) 267 WP_014065666.1 DUF5374 domain-containing protein Machinery gene
  PARA_RS09915 (PARA_19550) comP 2030619..2031305 (-) 687 WP_041918287.1 DUF2572 family protein Machinery gene
  PARA_RS09920 (PARA_19560) comO 2031302..2032018 (-) 717 WP_014065668.1 PulJ/GspJ family protein Machinery gene
  PARA_RS09925 (PARA_19570) comN 2032015..2032533 (-) 519 WP_014065669.1 hypothetical protein Machinery gene
  PARA_RS09930 (PARA_19580) suhB 2032733..2033533 (+) 801 WP_014065670.1 inositol-1-monophosphatase -
  PARA_RS09935 (PARA_19590) bioB 2033578..2034594 (-) 1017 WP_014065671.1 biotin synthase BioB -
  PARA_RS09940 (PARA_19600) thiQ 2034668..2035297 (-) 630 WP_014065672.1 thiamine ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 10189.67 Da        Isoelectric Point: 7.8655

>NTDB_id=42247 PARA_RS09910 WP_014065666.1 2030339..2030605(-) (comQ) [Haemophilus parainfluenzae T3T1]
MSLLLALSIFSGLFLIFNRWTSEQRKSAVRIFQEFQAIQIAENQAQRQFLGLSCENSVQQNGIQFAIQCSHHQVNIRYPQ
GEFLLKTE

Nucleotide


Download         Length: 267 bp        

>NTDB_id=42247 PARA_RS09910 WP_014065666.1 2030339..2030605(-) (comQ) [Haemophilus parainfluenzae T3T1]
ATGTCACTTTTATTAGCCTTATCGATTTTCAGCGGGTTATTTTTGATTTTTAACCGATGGACGAGTGAACAACGGAAAAG
TGCGGTCAGAATTTTTCAAGAATTTCAGGCGATTCAAATTGCTGAAAATCAGGCTCAACGTCAGTTTTTAGGCTTGTCTT
GTGAAAATAGCGTACAACAAAATGGCATTCAATTTGCAATTCAATGCAGTCATCATCAAGTGAATATACGCTATCCTCAA
GGTGAATTTTTATTGAAAACCGAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(46-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

59.091

100

0.591

Multiple sequence alignment