Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PARA_RS05400 Genome accession   NC_015964
Coordinates   1071745..1072698 (+) Length   317 a.a.
NCBI ID   WP_070868755.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae T3T1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1066745..1077698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PARA_RS05380 (PARA_10620) accA 1067329..1068276 (-) 948 WP_014064881.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  PARA_RS05385 (PARA_10630) znuB 1068365..1069150 (-) 786 WP_014064882.1 zinc ABC transporter permease subunit ZnuB -
  PARA_RS05390 (PARA_10640) znuC 1069160..1069954 (-) 795 WP_014064883.1 zinc ABC transporter ATP-binding protein ZnuC -
  PARA_RS05395 (PARA_10650) mepM 1070132..1071610 (+) 1479 WP_014064884.1 murein DD-endopeptidase MepM -
  PARA_RS05400 (PARA_10660) ceuB 1071745..1072698 (+) 954 WP_070868755.1 ABC transporter permease Machinery gene
  PARA_RS05405 (PARA_10670) - 1072691..1073650 (+) 960 WP_014064886.1 iron chelate uptake ABC transporter family permease subunit -
  PARA_RS05410 (PARA_10680) - 1073641..1074402 (+) 762 WP_014064887.1 ABC transporter ATP-binding protein -
  PARA_RS05415 (PARA_10690) - 1074417..1075325 (+) 909 WP_014064888.1 siderophore ABC transporter substrate-binding protein -
  PARA_RS05420 (PARA_10700) - 1075446..1076396 (+) 951 WP_014064889.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34998.20 Da        Isoelectric Point: 10.2040

>NTDB_id=42242 PARA_RS05400 WP_070868755.1 1071745..1072698(+) (ceuB) [Haemophilus parainfluenzae T3T1]
MIKRRYLIFLLIVLSFVSLFLGVSTVNLQGLLNFEGNQWQIFFISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTAIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=42242 PARA_RS05400 WP_070868755.1 1071745..1072698(+) (ceuB) [Haemophilus parainfluenzae T3T1]
ATGATTAAGCGGCGTTATCTGATTTTTCTTTTAATCGTGCTTTCCTTTGTTTCACTTTTTCTCGGGGTAAGTACCGTTAA
TTTACAAGGATTACTGAATTTTGAAGGTAATCAGTGGCAGATTTTTTTCATCAGTCGTGTGCCGCGTTTAATCAGTATTT
TGATTGCGGGTGCCTCTTTAAGTATTTGTGGCTTGGTGATGCAGCAACTCAGCCGAAACCGATTTGTTTCTCCCACCACG
GCGGGCACAATGGACAGCGCACGATTAGGCATTTTAATGGCCATGCTGTTTTTCCCAACAGCTTCAATGTTGTTAAAAAC
CGCCATTGCGGTCATCGTGTCTTTCCTTGGCACATTATTATTTATGACGATTCTGTCCCGTTTGAAATTCAAGGACACGA
TTTTTGTGCCCTTAGTGGGGATTATGTTTGGTAATATCATCAGTTCAATTACTGCCTTTATCGCTTATAAAGAAGATCTA
TTGCAAAACTTATCCGGGTGGTTACAAGGGGACTTTTCTCTTGTGATGTCAGGCCGTTATGAATTGTTGTATTTCAGTAT
TCCTACACTCATCGTGGCTTATTTATTTGCCCATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCGGTTAATCTAG
GTCTAAATTACAACCAGGTACTTTATCTCGGTCTGCTCATTGTGGCGGTGGTGTCCTCGATTATTATCGTGTCTGTTGGC
GTGATCCCTTTCTTGGGGCTAATTATTCCAAATATCGTCACGCTTTATTTAGGGGATAACTTGAAGAAAGTGTTATCTCA
TACCGCCTTGTTAGGTGCGGTATTTGTCTTATTCTGCGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTGGTTGGCGTATTTGGCAGTGGTATCTTCTTATTTTTATTATTAAAACGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.663

97.476

0.543

Multiple sequence alignment