Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   G3U99_RS24125 Genome accession   NZ_CP048694
Coordinates   1708238..1709335 (+) Length   365 a.a.
NCBI ID   WP_019275431.1    Uniprot ID   -
Organism   Vibrio coralliilyticus OCN008     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1703238..1714335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3U99_RS24095 (G3U99_24000) - 1704623..1704874 (-) 252 WP_029236068.1 YgjV family protein -
  G3U99_RS24100 (G3U99_24005) - 1705169..1705489 (-) 321 WP_006961083.1 DUF496 family protein -
  G3U99_RS24105 (G3U99_24010) - 1705683..1705877 (+) 195 WP_006961082.1 hypothetical protein -
  G3U99_RS24110 (G3U99_24015) - 1705907..1706566 (+) 660 WP_021458029.1 YceH family protein -
  G3U99_RS24115 (G3U99_24020) - 1706566..1706883 (+) 318 WP_021458030.1 GIY-YIG nuclease family protein -
  G3U99_RS24120 (G3U99_24025) traF 1706950..1708089 (+) 1140 WP_165579916.1 conjugal transfer protein TraF -
  G3U99_RS24125 (G3U99_24030) luxP 1708238..1709335 (+) 1098 WP_019275431.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  G3U99_RS24130 (G3U99_24035) luxQ 1709335..1711905 (+) 2571 WP_165579917.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  G3U99_RS24135 (G3U99_24040) - 1711891..1712556 (-) 666 WP_021458035.1 PilZ domain-containing protein -
  G3U99_RS24140 (G3U99_24045) glpD 1712663..1714195 (-) 1533 WP_021458036.1 glycerol-3-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41247.46 Da        Isoelectric Point: 5.6651

>NTDB_id=422415 G3U99_RS24125 WP_019275431.1 1708238..1709335(+) (luxP) [Vibrio coralliilyticus OCN008]
MFKATLLSLAVAVSATSQAHTTQVLNGYWQYDEYLDSHPVQKQLTDALSETVRNYPTPISAKQDKPVSIAVVYPGQQISD
YWVRNIKAFETRLEKLGISYKINQVFTRPNLDVRQQSLSLLEAVQNKADYLIFTLDTTRHRKFIEHVLSSTDTKLILQNI
TTPVRAWDDQQPFMYVGFDHIKGARILEQYYKDTIPKESRYSVLYFSEGYVSDARGDTFIEEMSHHDSYKLSSSYYTTAT
RESGFNAAVKAIEKDPSISFIYACSTDVALGAVEALKSMKREDILINGWGGGSAELEAISKGDLDVTAMRMNDDTGIAMA
EAIKWDLEGKDVPHVYSGDFEIVTKADSPSKVEKLKQRAFRYSDQ

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=422415 G3U99_RS24125 WP_019275431.1 1708238..1709335(+) (luxP) [Vibrio coralliilyticus OCN008]
ATGTTTAAAGCAACGCTGTTATCATTGGCGGTCGCTGTATCAGCGACAAGTCAGGCACACACTACACAAGTCCTCAATGG
TTACTGGCAATACGACGAATATCTCGATTCCCATCCCGTACAGAAGCAGTTAACGGATGCGTTGTCTGAAACAGTAAGAA
ATTACCCAACTCCGATTTCGGCGAAGCAAGATAAGCCAGTTTCTATTGCTGTGGTTTATCCTGGGCAGCAGATTTCGGAC
TATTGGGTTCGAAATATCAAAGCTTTTGAAACTCGTTTAGAAAAGTTAGGAATCAGCTACAAGATAAACCAAGTTTTTAC
TCGGCCGAATCTCGATGTCAGACAGCAAAGTCTTTCGTTGCTTGAAGCGGTTCAAAATAAAGCTGACTACTTGATATTCA
CGCTTGACACGACTCGTCACCGCAAATTTATTGAACATGTTTTGAGTTCAACCGATACCAAGCTCATTCTGCAAAATATT
ACGACCCCTGTTAGAGCTTGGGACGATCAGCAACCCTTCATGTATGTGGGGTTCGATCACATCAAAGGCGCTCGAATTCT
TGAGCAGTACTACAAAGACACCATCCCTAAAGAAAGCCGTTACTCGGTGCTTTACTTTTCTGAAGGTTACGTGAGTGATG
CTCGTGGTGACACGTTCATTGAAGAGATGAGTCATCATGATTCGTACAAGCTATCTTCATCGTATTACACCACAGCAACT
CGAGAATCTGGGTTTAATGCTGCGGTTAAAGCGATAGAGAAAGATCCAAGTATCTCCTTCATATATGCGTGCTCTACAGA
TGTTGCCTTAGGAGCTGTAGAAGCACTTAAATCGATGAAGAGAGAGGATATTCTTATTAATGGTTGGGGTGGTGGTAGCG
CCGAGTTGGAGGCTATTTCTAAAGGCGATCTAGATGTTACAGCCATGAGAATGAATGATGACACTGGTATTGCTATGGCA
GAAGCTATTAAGTGGGATCTTGAAGGTAAAGATGTGCCGCACGTCTACTCTGGTGACTTTGAAATAGTGACCAAAGCGGA
CAGCCCTTCAAAAGTTGAAAAATTAAAGCAGAGAGCGTTTAGGTACTCGGATCAATAA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.722

98.63

0.638

Multiple sequence alignment