Detailed information NTG0422408

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: G3U99_RS13410
• Genome accession: NZ_CP048693
• Coordinates: 2828860..2830284 (+)
• Length: 474 a.a.
• NCBI ID: WP_021457479.1
• Uniprot ID: -
• Organism: Vibrio coralliilyticus OCN008
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2823860..2835284

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3U99_RS13390 (G3U99_13335)	cobT	2824298..2825326 (-)	1029	WP_165579648.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
G3U99_RS13395 (G3U99_13340)	-	2825333..2825944 (-)	612	WP_021457482.1	flavin reductase family protein	-
G3U99_RS13400 (G3U99_13345)	-	2826469..2827155 (+)	687	WP_021457481.1	NAD(P)H-binding protein	-
G3U99_RS13405 (G3U99_13350)	-	2827347..2828720 (+)	1374	WP_021457480.1	L-cystine transporter	-
G3U99_RS13410 (G3U99_13355)	sbcB	2828860..2830284 (+)	1425	WP_021457479.1	exodeoxyribonuclease I	Machinery gene
G3U99_RS13415 (G3U99_13360)	-	2830428..2830793 (+)	366	WP_021457478.1	CidA/LrgA family protein	-
G3U99_RS13420 (G3U99_13365)	-	2830793..2831470 (+)	678	WP_006962033.1	CidB/LrgB family autolysis modulator	-
G3U99_RS13425 (G3U99_13370)	cdd	2831724..2832611 (+)	888	WP_021457477.1	cytidine deaminase	-
G3U99_RS13430 (G3U99_13375)	-	2832666..2833868 (-)	1203	WP_031343039.1	HD-GYP domain-containing protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54655.88 Da
• Isoelectric Point: 4.9570

>NTDB_id=422408 G3U99_RS13410 WP_021457479.1 2828860..2830284(+) (sbcB) [Vibrio coralliilyticus OCN008]
MQQAHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQTAASKGLPEP
EFIAKIHEQLSTPNTTNLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGVNWPENEEGFI
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGRECNY
TSWVVPVAWHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKCPILAPAKTLTAENAA
NIGIDREKCLQNLERLRQHPEIREKLNSLYSIEREYEKSDDVDTMLYDGFFSPAAKQSMDIIRETEPKNLSALDISFSDD
RIAPLLFRYRARHFPWTLDESEQQKWAAHSREYFESRIEDYMLNLENLVHEHESDEKKIAILKSVYQYVQKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=422408 G3U99_RS13410 WP_021457479.1 2828860..2830284(+) (sbcB) [Vibrio coralliilyticus OCN008]
ATGCAACAAGCGCATCAACCTACGTTTTTCTTCTTCGATTATGAAACGTGGGGAACCAGCCCAGCAAAGGACAGACCGTC
CCAGTTTGCGGGTGTACGCACCGACATGGATTTCAATATCATCGGTGAGCCTCTTGTTATCTACTGCCAACCGCCTTCAG
ATTATCTTCCATCACCCGAAGCCGCGCTTATCACTGGTATCACACCTCAGACGGCGGCAAGTAAAGGGTTACCTGAGCCG
GAATTTATTGCCAAAATTCATGAGCAGTTGTCCACGCCAAACACCACCAACTTGGGTTACAACAGCATTCGATTTGATGA
CGAAGTGACGCGATATACCTGTTACCGAAATTTCATCGATCCGTATGCGTGGAGCTGGCAAAACGGTAACTCTCGCTGGG
ACTTACTTGATGTCATGCGCGCCTGTTACGCCCTTCGCCCAGAAGGTGTTAATTGGCCAGAGAATGAAGAAGGTTTTATC
AGCTTTAAGCTAGAGCACTTATCCGTTGCCAATGGCATTGAGCACGAGAATGCACACGATGCGATGGCTGACGTAATAGC
AACGATTGAAATGGCTAAAAAGGTGAAAGCCGCTCAGCCTAAACTCTTTGATTATTTCCTTAGCATGCGCCACAAGCGCA
AACTGAACGAACTCGTCGATATCGTGAATATGACACCGCTTATGCACGTATCGGGTATGCTGGGGCGCGAATGCAATTAC
ACTAGCTGGGTGGTTCCGGTCGCTTGGCATCCAACCAACCAGAATGCGGTGATTGTTGTCGATTTAGCGAAAGACCCTCA
GCCGTTGTTGGATTTAGATGTAGAACAACTTAATGAGCGTCTCTACACCAAACATTCTGAACTTGGCCCAGACGAACTGC
CTGTACCAATCAAACTTGTCCATCTCAACAAGTGCCCTATTTTGGCTCCAGCCAAAACATTAACTGCTGAGAATGCAGCT
AACATAGGCATTGACAGAGAAAAATGCTTACAAAACCTTGAGCGACTAAGACAGCACCCTGAGATTAGAGAAAAACTCAA
TTCGCTATACAGTATCGAGAGAGAATACGAAAAGAGCGATGATGTTGATACTATGCTTTACGATGGTTTCTTCTCTCCTG
CGGCAAAGCAATCAATGGATATCATACGAGAAACTGAACCAAAGAATCTTTCCGCCCTTGATATTTCATTCAGTGACGAC
AGAATTGCTCCGCTTCTATTCCGCTATCGCGCCAGACATTTTCCGTGGACATTGGATGAGAGTGAACAACAAAAATGGGC
AGCACACAGCCGCGAATACTTCGAAAGTCGAATAGAAGACTACATGCTGAATTTGGAAAACTTAGTTCACGAACATGAGA
GTGACGAAAAAAAGATAGCTATCTTAAAATCTGTTTACCAATACGTTCAAAAGCTAGTATCTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.436	99.789	0.783