Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   G3U99_RS11910 Genome accession   NZ_CP048693
Coordinates   2500679..2502166 (-) Length   495 a.a.
NCBI ID   WP_021455926.1    Uniprot ID   -
Organism   Vibrio coralliilyticus OCN008     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2495679..2507166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3U99_RS11890 (G3U99_11835) - 2495683..2497134 (-) 1452 WP_165579616.1 lipopolysaccharide biosynthesis protein -
  G3U99_RS11895 (G3U99_11840) - 2497145..2498341 (-) 1197 WP_021455929.1 glycosyltransferase -
  G3U99_RS11900 (G3U99_11845) - 2498334..2499536 (-) 1203 WP_021455928.1 glycosyltransferase -
  G3U99_RS11905 (G3U99_11850) - 2499636..2500701 (-) 1066 Protein_2238 glycosyltransferase family 4 protein -
  G3U99_RS11910 (G3U99_11855) luxO 2500679..2502166 (-) 1488 WP_021455926.1 sigma-54-dependent transcriptional regulator Regulator
  G3U99_RS11915 (G3U99_11860) - 2502188..2504488 (-) 2301 WP_031342554.1 response regulator -
  G3U99_RS11920 (G3U99_11865) - 2504511..2505311 (-) 801 WP_021455924.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  G3U99_RS11925 (G3U99_11870) - 2505321..2506016 (-) 696 WP_006962356.1 chromosome partitioning ATPase -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 55104.94 Da        Isoelectric Point: 5.6521

>NTDB_id=422407 G3U99_RS11910 WP_021455926.1 2500679..2502166(-) (luxO) [Vibrio coralliilyticus OCN008]
MRAKVLLIEDSTSLAVLYKQYVKDEAFDLFHVETGRDAKAFIERNVPQLVILDLKLPDMNGEDILDWINENQVPTSVVVA
TAHGSVDIAVSLLQKGAKDFLEKPIQADRLKTSINLHLQQAKLEHLVEDIEAKFDRNRFHGFIGSCLPMQGVYKIIDSVA
PTTASVFIIGESGTGKEVCAEAIHKESKRNDKPFIAINCGAIPKDLMESEIFGHVKGAFTGATTDRKGAASLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTFTPLGGSKEMKVDVRIICATNRDPLLEVEEGRFREDLYYRVHVVPIEMPPLRERGNDI
TTLATHFLKLFAKEDGKKFNGINRDAESLLKHYSWPGNVRQLQNVIRNIVVLNDESKISVAHLPDQISKSNKSAKPRAAQ
AAIRHEAPAQASPVEAVDAVIQASTPVIESVNTQSSTPVTIRPMWQVERETIQQAIDFCDGNVLNAAVLLELSPSTVYRK
KQAWEAEEDEQQYAD

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=422407 G3U99_RS11910 WP_021455926.1 2500679..2502166(-) (luxO) [Vibrio coralliilyticus OCN008]
ATGAGAGCAAAAGTACTACTGATTGAAGACTCCACATCTCTGGCAGTCCTTTACAAACAGTACGTAAAAGATGAAGCGTT
TGACCTGTTTCATGTTGAAACAGGTCGTGATGCCAAAGCATTCATAGAACGAAACGTACCACAACTTGTGATTTTAGATC
TCAAGCTTCCGGACATGAACGGCGAAGATATCCTTGACTGGATCAACGAGAATCAAGTACCAACCTCGGTCGTCGTTGCA
ACCGCACACGGTTCCGTGGATATCGCGGTAAGCTTGCTCCAGAAAGGGGCGAAAGACTTTCTCGAAAAGCCGATTCAGGC
AGACCGCCTCAAAACGTCGATAAATCTCCACTTACAACAAGCTAAACTCGAACACTTAGTTGAAGATATCGAAGCGAAAT
TCGACAGAAATCGCTTCCATGGATTCATCGGCTCTTGTCTACCTATGCAGGGCGTATACAAAATCATCGACTCTGTTGCA
CCAACAACAGCGAGTGTTTTCATCATTGGAGAAAGCGGCACCGGTAAAGAAGTGTGCGCAGAAGCAATTCACAAAGAAAG
TAAACGAAACGATAAACCTTTTATCGCCATCAACTGTGGTGCTATTCCTAAAGATCTTATGGAAAGCGAAATTTTTGGCC
ATGTAAAAGGTGCATTCACAGGAGCGACTACGGACAGAAAAGGCGCGGCATCTTTAGCTCATGGAGGAACGCTCTTTCTT
GACGAGTTATGTGAGATGGAGCTGGAAATGCAGAAGAAACTGCTACGTTTCCTGCAGACAGGTACGTTCACCCCACTCGG
GGGTTCGAAAGAAATGAAGGTCGATGTGCGGATAATCTGCGCGACCAACCGTGACCCATTGCTAGAAGTTGAAGAAGGCC
GATTCCGAGAAGACTTGTACTACCGCGTTCATGTTGTGCCGATTGAGATGCCTCCTTTGAGAGAGCGTGGGAATGACATC
ACAACGCTAGCGACTCATTTCCTTAAGCTGTTCGCTAAAGAAGACGGTAAGAAATTCAACGGTATCAATCGAGATGCTGA
ATCTTTGCTCAAGCACTACTCCTGGCCCGGTAATGTGAGACAACTGCAAAATGTCATTCGCAATATAGTTGTTCTCAACG
ACGAATCAAAGATCTCTGTCGCTCATCTGCCTGATCAGATTTCAAAAAGCAATAAGTCGGCTAAGCCCAGAGCAGCCCAA
GCAGCAATCCGCCATGAAGCTCCTGCTCAAGCGTCACCAGTAGAAGCGGTGGATGCGGTAATACAAGCATCAACTCCAGT
GATTGAGAGTGTTAACACACAAAGTTCTACGCCGGTAACAATACGTCCAATGTGGCAGGTAGAGAGAGAAACCATTCAGC
AAGCAATTGATTTCTGCGATGGTAATGTCCTCAACGCAGCGGTATTACTCGAGTTGAGTCCATCAACCGTTTATCGTAAA
AAACAGGCTTGGGAAGCCGAAGAAGATGAGCAGCAATACGCGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(444-480)

Response regulator receiver domain (Response_reg)

(5-114)

Sigma-54 interaction domain (Sigma54_activat)

(144-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

50.209

96.566

0.485

Multiple sequence alignment