Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | G3U99_RS06525 | Genome accession | NZ_CP048693 |
| Coordinates | 1345790..1346773 (+) | Length | 327 a.a. |
| NCBI ID | WP_006958149.1 | Uniprot ID | A0A097AVA5 |
| Organism | Vibrio coralliilyticus OCN008 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1340790..1351773
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3U99_RS06490 (G3U99_06465) | ftsB | 1340864..1341142 (+) | 279 | WP_019277512.1 | cell division protein FtsB | - |
| G3U99_RS06495 (G3U99_06470) | ispD | 1341145..1341849 (+) | 705 | WP_021456687.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| G3U99_RS06500 (G3U99_06475) | ispF | 1341853..1342332 (+) | 480 | WP_019277514.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| G3U99_RS06505 (G3U99_06480) | truD | 1342379..1343425 (+) | 1047 | WP_021456686.1 | tRNA pseudouridine(13) synthase TruD | - |
| G3U99_RS06510 (G3U99_06485) | surE | 1343437..1344180 (+) | 744 | WP_031342810.1 | 5'/3'-nucleotidase SurE | - |
| G3U99_RS06515 (G3U99_06490) | - | 1344183..1344809 (+) | 627 | WP_021456684.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| G3U99_RS06520 (G3U99_06495) | nlpD | 1344812..1345723 (+) | 912 | WP_021456683.1 | murein hydrolase activator NlpD | - |
| G3U99_RS06525 (G3U99_06500) | rpoS | 1345790..1346773 (+) | 984 | WP_006958149.1 | RNA polymerase sigma factor RpoS | Regulator |
| G3U99_RS06530 (G3U99_06505) | - | 1346841..1348115 (-) | 1275 | WP_021456682.1 | HlyC/CorC family transporter | - |
| G3U99_RS06535 (G3U99_06510) | - | 1348238..1349032 (-) | 795 | WP_038164050.1 | cytochrome C assembly family protein | - |
| G3U99_RS06540 (G3U99_06515) | ffh | 1349238..1350629 (+) | 1392 | WP_021458280.1 | signal recognition particle protein | - |
| G3U99_RS06545 (G3U99_06520) | rpsP | 1350838..1351086 (+) | 249 | WP_005438039.1 | 30S ribosomal protein S16 | - |
| G3U99_RS06550 (G3U99_06525) | rimM | 1351116..1351664 (+) | 549 | WP_031343344.1 | ribosome maturation factor RimM | - |
Sequence
Protein
Download Length: 327 a.a. Molecular weight: 37396.39 Da Isoelectric Point: 4.7232
>NTDB_id=422397 G3U99_RS06525 WP_006958149.1 1345790..1346773(+) (rpoS) [Vibrio coralliilyticus OCN008]
MSISNTATKVEEFELEPTMESIQANGLTTANRTQAEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSMNEE
MSISNTATKVEEFELEPTMESIQANGLTTANRTQAEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSMNEE
Nucleotide
Download Length: 984 bp
>NTDB_id=422397 G3U99_RS06525 WP_006958149.1 1345790..1346773(+) (rpoS) [Vibrio coralliilyticus OCN008]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAGTTCGAGCTTGAACCAACAATGGAATCGATTCAGGCAAACGGGCT
TACTACCGCCAACCGCACCCAAGCAGAGGACGCCAAAGAGGAGTTTGACGCTTCCACAAAAAGCTTGGATGCCACTCAAC
TTTACTTGGGAGAAATTGGTTTCTCTCCACTACTCACCGCAGAAGAAGAAGTTTTGTACGCTCGCCGTGCCCTAAGAGGT
GATGAAGCTGCGCGTAAACGAATGATTGAAAGTAATCTTCGCTTAGTGGTGAAAATTTCCCGTCGATACAGCAACCGTGG
GCTTGCTCTGCTTGATCTGATTGAAGAAGGCAACTTAGGCTTGATTCGCGCGGTTGAAAAGTTTGACCCAGAGAGAGGGT
TCCGATTCTCGACCTATGCTACATGGTGGATCCGCCAAACGATTGAACGTGCTTTGATGAATCAAACTCGCACCATACGT
TTACCTATTCATGTGGTCAAGGAACTGAACATCTATCTGCGTACTGCTCGTGAGTTATCACAGAAGCTGGACCATGAACC
GACGGCAGAAGAGATTGCTACACAACTCGATAAGCCAGTCGACGATGTCAGCAAGATGCTACGCCTTAACGAACGCATTA
GTTCTGTAGACACCCCTATAGGTGGTGATGGTGAAAAAGCACTGCTGGATATTATTCCTGATGTGAACAACTCTGACCCT
GAAGTGTCCACACAAGACGATGATATCAAATCTTCATTGATCCATTGGTTGGATGAACTGAATCCTAAGCAGAAAGAAGT
CTTAGCCCGTCGTTTTGGATTATTGGGCTACGAGCCGTCAACACTGGAAGAAGTAGGACGTGAAATTAACCTAACTCGTG
AACGTGTTCGTCAGATTCAGGTTGAAGGCCTACGTCGTTTAAGAGAGATCCTGATCAAACAAGGTCTGAACATGGAAAGC
CTGTTCAGCATGAACGAAGAATAA
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAGTTCGAGCTTGAACCAACAATGGAATCGATTCAGGCAAACGGGCT
TACTACCGCCAACCGCACCCAAGCAGAGGACGCCAAAGAGGAGTTTGACGCTTCCACAAAAAGCTTGGATGCCACTCAAC
TTTACTTGGGAGAAATTGGTTTCTCTCCACTACTCACCGCAGAAGAAGAAGTTTTGTACGCTCGCCGTGCCCTAAGAGGT
GATGAAGCTGCGCGTAAACGAATGATTGAAAGTAATCTTCGCTTAGTGGTGAAAATTTCCCGTCGATACAGCAACCGTGG
GCTTGCTCTGCTTGATCTGATTGAAGAAGGCAACTTAGGCTTGATTCGCGCGGTTGAAAAGTTTGACCCAGAGAGAGGGT
TCCGATTCTCGACCTATGCTACATGGTGGATCCGCCAAACGATTGAACGTGCTTTGATGAATCAAACTCGCACCATACGT
TTACCTATTCATGTGGTCAAGGAACTGAACATCTATCTGCGTACTGCTCGTGAGTTATCACAGAAGCTGGACCATGAACC
GACGGCAGAAGAGATTGCTACACAACTCGATAAGCCAGTCGACGATGTCAGCAAGATGCTACGCCTTAACGAACGCATTA
GTTCTGTAGACACCCCTATAGGTGGTGATGGTGAAAAAGCACTGCTGGATATTATTCCTGATGTGAACAACTCTGACCCT
GAAGTGTCCACACAAGACGATGATATCAAATCTTCATTGATCCATTGGTTGGATGAACTGAATCCTAAGCAGAAAGAAGT
CTTAGCCCGTCGTTTTGGATTATTGGGCTACGAGCCGTCAACACTGGAAGAAGTAGGACGTGAAATTAACCTAACTCGTG
AACGTGTTCGTCAGATTCAGGTTGAAGGCCTACGTCGTTTAAGAGAGATCCTGATCAAACAAGGTCTGAACATGGAAAGC
CTGTTCAGCATGAACGAAGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
83.988 |
100 |
0.85 |