Detailed information NTG0422396

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IEC98_RS05080
• Genome accession: NZ_CP061758
• Coordinates: 1072304..1073296 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O68:H12 strain 97.3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1067304..1078296

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IEC98_RS05050 (IEC98_05050)	ispD	1067365..1068075 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
IEC98_RS05055 (IEC98_05055)	ispF	1068075..1068554 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IEC98_RS05060 (IEC98_05060)	truD	1068551..1069600 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
IEC98_RS05065 (IEC98_05065)	surE	1069581..1070342 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
IEC98_RS05070 (IEC98_05070)	pcm	1070336..1070962 (+)	627	WP_001723828.1	protein-L-isoaspartate O-methyltransferase	-
IEC98_RS05075 (IEC98_05075)	nlpD	1071147..1072241 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
IEC98_RS05080 (IEC98_05080)	rpoS	1072304..1073296 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
IEC98_RS05085 (IEC98_05085)	ygbN	1073390..1074754 (-)	1365	WP_000104429.1	GntP family transporter	-
IEC98_RS05090 (IEC98_05090)	ygbM	1074843..1075619 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
IEC98_RS05095 (IEC98_05095)	ygbL	1075624..1076262 (-)	639	WP_001278994.1	aldolase	-
IEC98_RS05100 (IEC98_05100)	otnK	1076259..1077521 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=422396 IEC98_RS05080 WP_000081550.1 1072304..1073296(+) (rpoS) [Escherichia coli O68:H12 strain 97.3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=422396 IEC98_RS05080 WP_000081550.1 1072304..1073296(+) (rpoS) [Escherichia coli O68:H12 strain 97.3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715