Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G3U99_RS01945 Genome accession   NZ_CP048693
Coordinates   428461..428979 (-) Length   172 a.a.
NCBI ID   WP_006957088.1    Uniprot ID   A0A097QN45
Organism   Vibrio coralliilyticus OCN008     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 423461..433979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3U99_RS01925 (G3U99_01925) - 425618..426874 (-) 1257 WP_029236357.1 HD-GYP domain-containing protein -
  G3U99_RS01930 (G3U99_01930) - 426993..427400 (-) 408 WP_006957092.1 VOC family protein -
  G3U99_RS01940 (G3U99_01940) - 427939..428415 (+) 477 WP_021458471.1 RDD family protein -
  G3U99_RS01945 (G3U99_01945) luxS 428461..428979 (-) 519 WP_006957088.1 S-ribosylhomocysteine lyase Regulator
  G3U99_RS01950 (G3U99_01950) - 429004..429600 (-) 597 WP_021458470.1 hypothetical protein -
  G3U99_RS01955 (G3U99_01955) gshA 429610..431178 (-) 1569 WP_031343374.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19051.83 Da        Isoelectric Point: 4.7134

>NTDB_id=422379 G3U99_RS01945 WP_006957088.1 428461..428979(-) (luxS) [Vibrio coralliilyticus OCN008]
MPLLDSFTVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPTEEQVAQSWLSSMQDVLKVESQNKIPELNEYQCGTAAMHSLEEAKQIAQAIIDAGIKVNLNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=422379 G3U99_RS01945 WP_006957088.1 428461..428979(-) (luxS) [Vibrio coralliilyticus OCN008]
ATGCCATTATTAGATAGCTTTACTGTGGATCACACACGTATGAATGCGCCAGCGGTGAGAGTGGCTAAGACAATGACCAC
GCCGAAAGGCGATACCATTACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGATATTCTTTCTGAGAAAGGCATTC
ACACACTGGAGCACTTGTACGCAGGCTTCATGCGCAGTCACTTAAATGGTGATAGCGTAGAAATTATCGATATTTCGCCA
ATGGGTTGCCGTACTGGCTTTTACATGAGCCTGATTGGTACACCAACAGAAGAGCAGGTCGCTCAGTCTTGGTTGTCATC
GATGCAAGATGTGCTAAAAGTTGAAAGCCAAAACAAGATCCCTGAGTTAAACGAGTATCAATGTGGCACCGCTGCTATGC
ACTCTCTTGAGGAAGCTAAGCAGATTGCCCAAGCTATTATTGACGCAGGCATCAAAGTTAACCTCAATGACGAGTTAGCT
TTACCTGAATCGATGCTTAAAGAATTGAAAGTCGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097QN45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.719

99.419

0.872

Multiple sequence alignment