Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   G3T58_RS28605 Genome accession   NZ_CP048687
Coordinates   5624897..5625184 (-) Length   95 a.a.
NCBI ID   WP_000648330.1    Uniprot ID   A0AAE9P9A9
Organism   Bacillus paranthracis strain MN1F     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5619897..5630184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T58_RS28585 - 5620297..5621157 (+) 861 WP_000064378.1 AraC family transcriptional regulator -
  G3T58_RS28590 - 5621226..5622089 (+) 864 WP_000615942.1 helix-turn-helix domain-containing protein -
  G3T58_RS28595 ugpC 5622356..5623459 (+) 1104 WP_000829433.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  G3T58_RS28600 - 5623672..5624622 (-) 951 WP_001089039.1 serine protease -
  G3T58_RS28605 abrB 5624897..5625184 (-) 288 WP_000648330.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  G3T58_RS28610 - 5625301..5627181 (-) 1881 WP_001026020.1 ABC transporter permease -
  G3T58_RS28615 nadE 5627453..5628271 (+) 819 WP_000174881.1 ammonia-dependent NAD(+) synthetase -
  G3T58_RS28620 - 5628320..5628781 (-) 462 WP_000024998.1 NUDIX hydrolase -
  G3T58_RS28625 - 5628813..5629010 (-) 198 WP_001008785.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10617.34 Da        Isoelectric Point: 6.3179

>NTDB_id=422357 G3T58_RS28605 WP_000648330.1 5624897..5625184(-) (abrB) [Bacillus paranthracis strain MN1F]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=422357 G3T58_RS28605 WP_000648330.1 5624897..5625184(-) (abrB) [Bacillus paranthracis strain MN1F]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516

Multiple sequence alignment