Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   G3T58_RS15725 Genome accession   NZ_CP048687
Coordinates   3103103..3104146 (+) Length   347 a.a.
NCBI ID   WP_163073111.1    Uniprot ID   -
Organism   Bacillus paranthracis strain MN1F     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3098103..3109146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T58_RS15690 - 3098356..3098844 (+) 489 WP_000764271.1 hypothetical protein -
  G3T58_RS15695 - 3098881..3099192 (-) 312 WP_001093243.1 hypothetical protein -
  G3T58_RS15700 - 3099447..3099662 (+) 216 WP_001008331.1 DUF3912 family protein -
  G3T58_RS15705 - 3099750..3100157 (+) 408 WP_000877911.1 hypothetical protein -
  G3T58_RS15710 - 3100332..3101726 (-) 1395 WP_001094339.1 L-cystine transporter -
  G3T58_RS15715 - 3101834..3102076 (-) 243 WP_000440719.1 DUF2626 domain-containing protein -
  G3T58_RS15720 - 3102202..3102897 (-) 696 WP_000434105.1 helix-turn-helix domain-containing protein -
  G3T58_RS15725 comGA 3103103..3104146 (+) 1044 WP_163073111.1 competence protein ComGA Machinery gene
  G3T58_RS15730 comGB 3104139..3105170 (+) 1032 WP_000473553.1 competence type IV pilus assembly protein ComGB -
  G3T58_RS15735 comGC 3105182..3105481 (+) 300 WP_001178694.1 competence type IV pilus major pilin ComGC -
  G3T58_RS15740 comGD 3105478..3105933 (+) 456 WP_000810387.1 comG operon protein ComGD -
  G3T58_RS15745 comGE 3105926..3106228 (+) 303 WP_000829518.1 competence type IV pilus minor pilin ComGE -
  G3T58_RS15750 comGF 3106198..3106668 (+) 471 WP_000923058.1 competence type IV pilus minor pilin ComGF -
  G3T58_RS15755 comGG 3106665..3107036 (+) 372 WP_000595194.1 competence type IV pilus minor pilin ComGG -
  G3T58_RS15760 - 3107212..3107862 (+) 651 WP_000183848.1 2OG-Fe(II) oxygenase -
  G3T58_RS15765 - 3107982..3108503 (+) 522 WP_163073070.1 shikimate kinase -
  G3T58_RS15770 - 3108517..3108744 (+) 228 WP_033693821.1 YqzE family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39392.86 Da        Isoelectric Point: 9.1826

>NTDB_id=422342 G3T58_RS15725 WP_163073111.1 3103103..3104146(+) (comGA) [Bacillus paranthracis strain MN1F]
MNGIESFANTILKEACRVQASDLHIVPRKKDVVIQLRIGKDLMTKQYIEKEFGEKLVSHFKFLASMDIGERRKQQNGSLY
LQMDGQEVYLRLSTLPTVYQESLVIRLHLQASIQPLSHLSLFPSTAKKLLSFLHYSHGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIVTLEDPVEKRNDDVLQIQINEKAGITYEAGLKAILRHDPDVILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAILRFMDFGITRQEIEQSLLAIAAQRLVELKCPFCKRKCSTVCKSMRQVRQASIYELLYGYELKQAIKEANGEC
VTYKHETLESSLRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=422342 G3T58_RS15725 WP_163073111.1 3103103..3104146(+) (comGA) [Bacillus paranthracis strain MN1F]
ATGAATGGAATTGAAAGCTTTGCGAATACGATTTTGAAAGAGGCGTGTAGGGTACAAGCTTCGGATTTACATATTGTGCC
CCGGAAGAAGGATGTAGTGATTCAACTACGCATAGGGAAAGATTTAATGACGAAACAATACATTGAAAAGGAATTTGGAG
AAAAACTTGTTTCACACTTTAAATTTTTAGCATCCATGGATATAGGGGAGAGGCGGAAGCAACAAAATGGTTCACTGTAT
TTACAAATGGATGGACAGGAAGTGTATTTACGTCTTTCCACGCTTCCAACTGTATATCAAGAAAGTCTCGTTATTCGTCT
TCATTTACAAGCATCTATTCAGCCGTTATCTCATCTTTCGTTATTTCCAAGTACAGCGAAGAAACTACTTTCTTTTTTAC
ATTATTCCCATGGGTTACTCGTATTTACTGGACCGACTGGATCGGGGAAGACAACAACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGCCGCATCGTTACACTGGAAGATCCAGTTGAAAAAAGAAATGACGATGTATTACAAATTCA
AATAAATGAAAAAGCAGGTATCACATATGAGGCGGGACTAAAGGCTATTTTGCGTCATGATCCAGATGTTATTTTAGTGG
GTGAAATTCGTGATGAAGAAACAGCAAAAATCGCTATAAGAGCAAGTTTGACTGGCCATTTAGTAATGACGACACTGCAT
ACGAATGATGCGAAAGGAGCAATACTTCGGTTTATGGACTTTGGCATAACAAGGCAAGAGATTGAACAATCTTTATTGGC
TATAGCTGCACAGCGACTTGTTGAATTGAAGTGTCCGTTTTGTAAAAGAAAGTGCTCAACTGTATGTAAATCAATGAGGC
AAGTAAGGCAAGCGAGTATTTATGAGTTGTTATATGGATATGAGTTAAAACAAGCGATTAAAGAAGCAAACGGGGAATGT
GTCACGTACAAGCATGAGACATTAGAGTCTTCGTTGCGAAAAGGATACGCTTTAGGATTTTTAGAAGAGGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

58.213

100

0.582
  pilB Vibrio campbellii strain DS40M4

35.694

100

0.363

Multiple sequence alignment