Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   G3T58_RS09320 Genome accession   NZ_CP048687
Coordinates   1845695..1845979 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus paranthracis strain MN1F     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1840695..1850979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T58_RS09305 rnmV 1841486..1842043 (-) 558 WP_000692830.1 ribonuclease M5 -
  G3T58_RS09310 - 1842261..1843028 (-) 768 WP_000895835.1 TatD family hydrolase -
  G3T58_RS09315 metG 1843195..1845177 (-) 1983 WP_163073040.1 methionine--tRNA ligase -
  G3T58_RS09320 abrB 1845695..1845979 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  G3T58_RS09325 rsmI 1846000..1846875 (-) 876 WP_000267830.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  G3T58_RS09330 - 1846844..1847134 (-) 291 WP_000414340.1 GIY-YIG nuclease family protein -
  G3T58_RS09335 - 1847121..1847861 (-) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  G3T58_RS09340 yabA 1847982..1848332 (-) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  G3T58_RS09345 - 1848347..1849174 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  G3T58_RS09350 holB 1849180..1850163 (-) 984 WP_000978581.1 DNA polymerase III subunit delta' -
  G3T58_RS09355 tmk 1850199..1850825 (-) 627 WP_000677229.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=422323 G3T58_RS09320 WP_000843036.1 1845695..1845979(+) (abrB) [Bacillus paranthracis strain MN1F]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=422323 G3T58_RS09320 WP_000843036.1 1845695..1845979(+) (abrB) [Bacillus paranthracis strain MN1F]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAGCTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment