Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   G3T13_RS10925 Genome accession   NZ_CP048686
Coordinates   2197913..2198848 (+) Length   311 a.a.
NCBI ID   WP_061774675.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain KACC 13441     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2192913..2203848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T13_RS10910 - 2194948..2195559 (+) 612 WP_061774672.1 hypothetical protein -
  G3T13_RS10915 murC 2195828..2197162 (+) 1335 WP_061774673.1 UDP-N-acetylmuramate--L-alanine ligase -
  G3T13_RS10920 - 2197263..2197751 (+) 489 WP_061774674.1 GNAT family N-acetyltransferase -
  G3T13_RS10925 comYH 2197913..2198848 (+) 936 WP_061774675.1 class I SAM-dependent methyltransferase Machinery gene
  G3T13_RS10930 - 2199157..2200350 (+) 1194 WP_061774676.1 acetate kinase -
  G3T13_RS10935 pyrH 2200590..2201309 (+) 720 WP_061774677.1 UMP kinase -
  G3T13_RS10940 frr 2201340..2201897 (+) 558 WP_061774678.1 ribosome recycling factor -
  G3T13_RS10945 - 2202064..2203317 (+) 1254 WP_163604828.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 34677.70 Da        Isoelectric Point: 4.5465

>NTDB_id=422305 G3T13_RS10925 WP_061774675.1 2197913..2198848(+) (comYH) [Lactococcus raffinolactis strain KACC 13441]
MNMEKIETAFGLLLANVQQLETRLATHFYDALIEQNVSYLGKAVSEDLQQRNEQLRALNLTKQEWQKVYQFALIKGAKDM
HLQANHQLTPDAIGYIINFMIETLSTETNLSILELGAGTGNLAETLLTSMSDKALTYTGFEVDDLMIDLSASIADVMQTS
AQFLQIDAVRPQVIEPVDLLLSDLPVGYYPDDAIAQRSVVGSQSEHTYAHHLLMAQGFKYLKADGYAIFIAPSDLLSSPQ
SDLLKKWLQDYASVAAVITLPEDIVTENHTKAIFVLQKSAQGKAPFVFPLISLTNPEIVRSFMTQFRQNMI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=422305 G3T13_RS10925 WP_061774675.1 2197913..2198848(+) (comYH) [Lactococcus raffinolactis strain KACC 13441]
ATGAATATGGAAAAAATAGAAACGGCATTTGGCCTATTATTAGCCAACGTTCAGCAACTTGAAACACGCTTGGCAACACA
TTTTTACGATGCCTTGATTGAGCAAAATGTGAGCTATCTCGGTAAAGCTGTATCAGAAGACTTGCAGCAACGCAATGAGC
AGTTGCGTGCGCTCAATTTGACAAAACAAGAGTGGCAAAAGGTCTATCAGTTTGCCTTGATTAAGGGTGCTAAGGACATG
CACCTGCAAGCCAATCATCAGTTAACACCGGATGCAATTGGGTATATCATCAATTTCATGATTGAGACCTTATCTACCGA
AACTAACTTGTCTATTTTGGAATTAGGGGCTGGGACAGGTAATTTAGCCGAGACATTATTGACTAGCATGTCAGATAAAG
CACTAACCTATACTGGCTTTGAAGTTGATGATTTAATGATTGACCTGTCGGCTAGCATTGCCGATGTCATGCAAACTTCA
GCCCAATTTTTGCAGATTGATGCTGTGCGCCCTCAGGTTATCGAACCTGTGGATCTGTTATTGTCAGATTTACCGGTAGG
CTATTATCCAGATGATGCGATTGCGCAACGTTCAGTTGTTGGCAGTCAGAGTGAGCATACCTACGCCCATCACTTGCTGA
TGGCGCAAGGATTCAAATATCTAAAAGCAGATGGTTATGCGATTTTTATTGCACCGAGTGATTTGTTGTCTAGTCCGCAA
TCCGATTTATTAAAAAAATGGTTGCAGGATTATGCCAGCGTCGCTGCTGTGATTACTTTACCAGAAGACATTGTCACTGA
AAATCATACTAAGGCAATCTTTGTTTTACAAAAGTCTGCACAAGGTAAAGCACCCTTTGTTTTTCCTTTGATAAGTCTAA
CCAATCCTGAAATTGTGCGGTCTTTCATGACGCAATTTCGTCAGAATATGATATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.662

100

0.547
  comYH Streptococcus mutans UA159

54.662

100

0.547

Multiple sequence alignment