Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   G3T13_RS08705 Genome accession   NZ_CP048686
Coordinates   1786503..1787264 (-) Length   253 a.a.
NCBI ID   WP_061774550.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain KACC 13441     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1781503..1792264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T13_RS08695 dnaN 1783458..1784600 (-) 1143 WP_061774552.1 DNA polymerase III subunit beta -
  G3T13_RS08700 dnaA 1784772..1786142 (-) 1371 WP_061774551.1 chromosomal replication initiator protein DnaA -
  G3T13_RS08705 spo0J 1786503..1787264 (-) 762 WP_061774550.1 ParB/RepB/Spo0J family partition protein Regulator
  G3T13_RS08710 - 1787322..1788362 (+) 1041 WP_061774549.1 glycerate kinase -
  G3T13_RS08715 - 1788403..1789359 (-) 957 WP_061774548.1 rhodanese-related sulfurtransferase -
  G3T13_RS08720 - 1789507..1790052 (+) 546 WP_061774547.1 DNA-3-methyladenine glycosylase I -
  G3T13_RS08725 - 1790093..1790839 (-) 747 WP_061774546.1 DUF975 family protein -
  G3T13_RS08730 yajC 1791038..1791394 (+) 357 WP_061774545.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 28712.38 Da        Isoelectric Point: 7.2096

>NTDB_id=422294 G3T13_RS08705 WP_061774550.1 1786503..1787264(-) (spo0J) [Lactococcus raffinolactis strain KACC 13441]
METIQLLPISDIVKNPYQPRIVFDDKKLQELSDSIKENGVLQPIIVRKSPIIGYEILAGERRFRASQLAGLTEIPAIIRQ
LTDDEMMTLAILENLQRDDLTLLDEARSLQNLVTKQGLTHTQIAEKLGKSRPYVTNAIRILNLPDPILEMIEVQKISQGH
ARLLLGLKTPQEQLDWAQRIDQEQLSVRALEKRLTKQTNEPNIQSSKDVFIKSAETDIAKALGQAVTIKPKKIEIAYNTL
EDLNRLLLILTQK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=422294 G3T13_RS08705 WP_061774550.1 1786503..1787264(-) (spo0J) [Lactococcus raffinolactis strain KACC 13441]
ATGGAAACTATTCAATTGCTACCAATATCAGATATCGTCAAAAATCCCTATCAACCTCGGATCGTCTTTGACGACAAAAA
GTTACAAGAACTTAGCGATTCAATTAAAGAAAATGGTGTCTTACAACCAATCATCGTCAGAAAATCACCAATTATTGGGT
ACGAAATTTTAGCTGGGGAACGCCGTTTTAGAGCTTCTCAATTAGCTGGCCTCACTGAAATTCCGGCTATTATCCGCCAA
TTAACAGATGACGAGATGATGACACTAGCGATTTTGGAAAATTTACAACGGGATGATTTGACCCTTCTAGATGAAGCGCG
GAGTCTTCAAAATCTCGTGACGAAACAAGGTTTGACCCATACTCAAATCGCTGAAAAACTTGGCAAATCTAGACCTTATG
TGACCAATGCCATTCGAATTTTAAATCTCCCTGACCCAATTTTAGAGATGATTGAGGTGCAAAAGATCTCCCAAGGTCAC
GCGCGACTTTTACTCGGTCTAAAAACACCACAAGAGCAATTGGATTGGGCACAACGGATTGATCAAGAACAACTTTCTGT
TCGCGCACTCGAAAAACGCTTGACCAAACAAACGAACGAGCCTAATATACAATCTTCTAAAGATGTCTTTATCAAATCAG
CTGAAACAGATATTGCGAAAGCTTTGGGTCAAGCAGTAACGATTAAGCCAAAGAAAATAGAAATTGCCTACAATACACTA
GAAGATCTTAACAGACTTCTCCTCATTTTGACCCAAAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.606

99.209

0.482

Multiple sequence alignment