Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   G3T13_RS07865 Genome accession   NZ_CP048686
Coordinates   1633055..1634113 (-) Length   352 a.a.
NCBI ID   WP_061773607.1    Uniprot ID   -
Organism   Lactococcus raffinolactis strain KACC 13441     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1628055..1639113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T13_RS07855 - 1630519..1631232 (-) 714 WP_061773609.1 LytR/AlgR family response regulator transcription factor -
  G3T13_RS07860 - 1631539..1632771 (-) 1233 WP_061773608.1 GHKL domain-containing protein -
  G3T13_RS07865 sepM 1633055..1634113 (-) 1059 WP_061773607.1 SepM family pheromone-processing serine protease Regulator
  G3T13_RS07870 coaD 1634100..1634582 (-) 483 WP_061773606.1 pantetheine-phosphate adenylyltransferase -
  G3T13_RS07875 - 1634579..1635040 (-) 462 WP_061773605.1 ASCH domain-containing protein -
  G3T13_RS07880 rsmD 1635003..1635569 (-) 567 WP_061773604.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  G3T13_RS07885 - 1635769..1637022 (+) 1254 WP_163604757.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38056.94 Da        Isoelectric Point: 9.4237

>NTDB_id=422292 G3T13_RS07865 WP_061773607.1 1633055..1634113(-) (sepM) [Lactococcus raffinolactis strain KACC 13441]
MIKSKKSFIKKRWAIASLVGILVFLGVLLPLPYYVEMPGTTENVGEMIKVNQTPLHQKSEEGALNLTTVSMMRATGASLI
YAALTDFTDVYSKKDMMGNQTDADYNRMNAFYMASAQNAATYEAFKLAGKPFELDYKGVYVLDVLKKSTFKDVLHIADTV
TGVNGQSFKSSEELMTYIKSQKIGAKISVQYTDEAGKAKSADGKTIKIADGKAGIGITLVDHTEVKSTPSVTIDAGAIGG
PSAGMMFTLEIYSQLTGQDLTKGREIAGTGTIEKDGKIGRIGGIDKKIATASRNGAQIFLAPDDEITPEMKKVEPGVKSN
YQEALAAAKKLNTKMKIVPVKTVQDAIDYLKE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=422292 G3T13_RS07865 WP_061773607.1 1633055..1634113(-) (sepM) [Lactococcus raffinolactis strain KACC 13441]
TTGATCAAAAGTAAAAAGTCATTTATAAAAAAACGCTGGGCTATTGCTAGTCTTGTTGGTATCCTAGTTTTTCTTGGTGT
TTTGCTCCCCCTACCCTACTATGTTGAGATGCCTGGCACGACTGAAAATGTTGGTGAGATGATAAAAGTCAATCAGACAC
CATTGCACCAAAAATCAGAAGAAGGGGCTTTGAATTTGACGACTGTTTCGATGATGCGGGCAACGGGTGCGAGCTTGATT
TATGCTGCATTGACGGATTTTACCGATGTTTACAGTAAAAAAGACATGATGGGTAACCAGACGGATGCTGATTACAATCG
GATGAATGCTTTTTACATGGCAAGTGCTCAGAATGCTGCAACCTACGAGGCATTTAAGTTGGCGGGGAAACCCTTTGAGT
TAGATTATAAAGGTGTTTATGTCCTGGATGTGCTGAAGAAATCGACGTTTAAAGATGTTTTGCATATCGCGGATACAGTG
ACAGGTGTCAATGGGCAAAGTTTTAAATCATCTGAGGAGCTGATGACCTACATCAAGTCCCAAAAGATTGGGGCTAAGAT
TTCAGTTCAGTATACAGATGAAGCGGGTAAGGCAAAATCGGCAGACGGCAAAACGATTAAGATCGCAGATGGTAAAGCTG
GAATTGGGATTACCTTGGTGGATCATACGGAGGTTAAGAGTACGCCATCTGTGACAATTGATGCGGGGGCGATTGGTGGC
CCATCTGCAGGGATGATGTTTACGCTTGAAATCTATTCCCAATTGACGGGCCAAGATTTAACGAAAGGTCGGGAGATTGC
GGGTACAGGTACGATTGAAAAAGATGGGAAAATCGGTCGAATTGGCGGTATTGATAAAAAAATCGCCACTGCCAGTCGCA
ATGGTGCTCAAATTTTTCTAGCGCCTGATGATGAGATAACCCCAGAGATGAAGAAAGTCGAGCCTGGTGTTAAGTCAAAC
TATCAAGAAGCATTGGCTGCAGCTAAAAAACTGAATACAAAGATGAAAATTGTCCCAGTGAAAACAGTGCAGGATGCAAT
TGACTATTTGAAAGAATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-321)

PDZ domain (PDZ_2)

(134-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

50.997

99.716

0.509

Multiple sequence alignment