Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   G0030_RS12555 Genome accession   NZ_CP048681
Coordinates   2648968..2651190 (+) Length   740 a.a.
NCBI ID   WP_163146182.1    Uniprot ID   A0A6C0Y5Z9
Organism   Acinetobacter indicus strain Q186-3_T     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2643968..2656190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0030_RS12535 (G0030_12535) lnt 2644793..2646352 (+) 1560 WP_005181876.1 apolipoprotein N-acyltransferase -
  G0030_RS12540 (G0030_12540) - 2646507..2646842 (-) 336 WP_045795389.1 hypothetical protein -
  G0030_RS12545 (G0030_12545) gspG 2647122..2647559 (-) 438 WP_005181871.1 type II secretion system major pseudopilin GspG -
  G0030_RS12550 (G0030_12550) gspF 2647611..2648816 (-) 1206 WP_045795388.1 type II secretion system inner membrane protein GspF -
  G0030_RS12555 (G0030_12555) priA 2648968..2651190 (+) 2223 WP_163146182.1 primosomal protein N' Machinery gene
  G0030_RS12560 (G0030_12560) - 2651241..2653082 (+) 1842 WP_168396677.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  G0030_RS12565 (G0030_12565) - 2653133..2654008 (+) 876 WP_005181862.1 Hsp33 family molecular chaperone HslO -
  G0030_RS12570 (G0030_12570) - 2654420..2654881 (+) 462 WP_127800189.1 DUF2147 domain-containing protein -
  G0030_RS12575 (G0030_12575) - 2655285..2655623 (+) 339 WP_005181858.1 chaperone modulator CbpM -
  G0030_RS12580 (G0030_12580) - 2655700..2655969 (+) 270 WP_034598128.1 YdcH family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84198.30 Da        Isoelectric Point: 8.7901

>NTDB_id=422248 G0030_RS12555 WP_163146182.1 2648968..2651190(+) (priA) [Acinetobacter indicus strain Q186-3_T]
MPNSPVHPAPIYRVRVAVPVYLYDGFDYMLSAAEYQQAAVGARVLVSFGRQNLVGIIIEKLPPDHPLDPKIKLKAISELL
DQQPILDQKVLTLLTWSAQYYQFPIGEVMHSALPSLLRQGRPYNLLARMWKLLDDQAEAKLKRSEKQQEAYKVLKLHPSG
TSENILNLAGIETATLKALEKKQICYCDLEQQDFSPVPMTLAQMPLTPNSDQKQAIETVLKAQHRYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLEHCPVILGSATPSIDSYALTEQGKMIRLELNQRAGPALMPKIHI
IDLKVAQKQQGLSLLLIQEIKKRLQKKEQVLIFLNRRGYAPVLVCDSCGWQAQCPHCDANFTLHHSPYTHLHCHHCGTIH
RKPEQCPQCQHSELKTLGMGTAKVEENLQHLFPDYEVVRVDRDSTSRVGSWQKIYDRIQTSQPLILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHPLLSTLVEQDYRAFARQTLKERQAALL
PPFRYTALIRCESKSQEQNQQFLQQHAQWLRENSEQLIDIWGPIPAPMERKAGRYQAHLVLLSQDRARLHFYLRAWWQNM
LHHKPSNMKLSLDIDPQEFS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=422248 G0030_RS12555 WP_163146182.1 2648968..2651190(+) (priA) [Acinetobacter indicus strain Q186-3_T]
ATGCCAAATTCGCCCGTCCATCCCGCCCCCATCTACCGTGTTCGTGTAGCTGTTCCGGTCTATCTGTATGACGGGTTTGA
CTATATGCTCAGTGCGGCTGAATATCAGCAGGCTGCCGTTGGCGCGCGGGTGCTGGTGTCCTTTGGCCGGCAGAATCTGG
TGGGCATCATTATTGAAAAACTCCCGCCCGATCATCCGCTTGACCCCAAGATTAAACTGAAAGCCATTAGCGAGCTGCTC
GACCAGCAGCCGATTCTAGATCAGAAAGTTTTAACTTTGTTGACATGGTCGGCGCAGTATTATCAGTTTCCGATTGGCGA
AGTGATGCATAGCGCCCTGCCCAGCCTGTTACGTCAGGGACGCCCCTATAATTTACTGGCACGAATGTGGAAACTGCTGG
ATGATCAGGCCGAAGCCAAACTGAAGCGCTCCGAGAAGCAGCAGGAGGCTTATAAAGTCCTGAAGCTGCATCCGAGCGGG
ACCTCAGAAAATATCCTGAATCTGGCCGGTATTGAAACTGCAACTTTAAAAGCGCTGGAAAAAAAGCAGATTTGCTACTG
CGATCTGGAGCAGCAGGATTTTAGCCCAGTGCCAATGACGCTGGCGCAAATGCCGTTAACCCCGAACAGCGACCAGAAAC
AGGCCATTGAAACCGTACTGAAAGCACAGCATCGTTATCAGGCCTTTTTACTCGATGGTCTGACCGGCAGTGGTAAAACC
GAAGTCTATCTGCAGATCATGCAGGAAGTGCTAAAACAGGGAAAACAGGTATTGGTGCTGGTGCCGGAAATTGGCCTGAC
CCCTCAAACCATTAGCCGCTTCCAGTCTCGTTTTCACTGTCATATTGCGCTGCTGCATTCCGGTTTAAATGACAGCAAAC
GTCTGCAGGCCTGGCAGGCCGCCCAGACTGGCAAGGCTTCGATTATTCTTGGTACACGCTCGGCAATTTATACCCCGCTG
CCCAATCTGGGGCTGATTATTCTGGATGAAGAACACGACCTGTCATTTAAACAGCAGGAAGGCTTTCGTTACCATGCCCG
CGATGTGGCCTTATACCGTGCTCATTTAGAACACTGCCCGGTGATTCTCGGTTCAGCCACGCCCAGCATTGACAGCTATG
CCTTAACGGAACAGGGTAAAATGATCCGTCTGGAACTGAACCAGCGTGCCGGCCCGGCACTGATGCCCAAAATTCACATC
ATTGATTTAAAAGTTGCGCAAAAGCAGCAAGGTCTAAGCCTGCTGCTGATTCAGGAAATCAAAAAACGCCTGCAGAAAAA
AGAACAGGTGCTAATTTTCTTAAACCGCCGTGGTTATGCACCGGTGCTGGTCTGTGACAGCTGCGGCTGGCAGGCACAAT
GCCCGCATTGTGATGCCAACTTTACCCTGCATCATAGTCCATATACCCATCTGCACTGCCATCATTGTGGCACCATTCAC
CGCAAGCCGGAGCAATGCCCGCAGTGCCAGCATAGCGAACTGAAAACCCTGGGCATGGGCACGGCCAAGGTTGAAGAAAA
CCTGCAACATCTGTTCCCGGACTATGAGGTGGTGCGGGTAGACCGCGATTCCACCAGCCGCGTCGGCAGCTGGCAAAAAA
TTTATGACCGCATTCAAACCAGCCAGCCACTGATTCTGCTTGGCACCCAAATGCTGGCCAAAGGGCATCATTTTCCTTAT
GTCACCTTAGTAGCGATTTTAGATATTGATGCCGGCCTGTTAAGTGTTGATATCCGGGCGCCAGAGCGGACTGCGCAGCT
GATTGTGCAGGTGGCCGGTCGTGCCGGTCGCGGTGAGCATAAAGGCGATGTCTATTTACAGACCCTGCGTCCTGATCATC
CGCTGCTGAGCACGCTGGTCGAGCAGGATTATCGTGCCTTTGCCCGGCAAACCTTAAAAGAACGTCAGGCCGCCCTGCTG
CCCCCATTTCGCTATACCGCCCTGATTCGCTGCGAATCCAAAAGTCAGGAGCAGAATCAGCAGTTTTTACAGCAACATGC
CCAGTGGCTGCGAGAAAATTCTGAACAGTTAATTGATATCTGGGGCCCGATTCCAGCGCCAATGGAACGCAAAGCCGGCC
GCTATCAGGCGCATCTGGTGCTGTTGTCGCAAGATCGCGCCCGTTTACATTTTTATCTACGTGCATGGTGGCAAAATATG
TTGCATCACAAGCCATCAAATATGAAACTTAGCTTAGATATAGACCCTCAGGAATTCAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

Type III restriction enzyme, res subunit (ResIII)

(207-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C0Y5Z9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

73.45

100

0.736

Multiple sequence alignment