Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   G0030_RS11915 Genome accession   NZ_CP048681
Coordinates   2522953..2523831 (-) Length   292 a.a.
NCBI ID   WP_180006786.1    Uniprot ID   -
Organism   Acinetobacter indicus strain Q186-3_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2517953..2528831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0030_RS11895 (G0030_11885) miaB 2519506..2520960 (+) 1455 WP_104472822.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  G0030_RS11900 (G0030_11890) - 2521002..2522075 (+) 1074 WP_016659561.1 PhoH family protein -
  G0030_RS11905 (G0030_11895) ybeY 2522095..2522577 (+) 483 WP_005182166.1 rRNA maturation RNase YbeY -
  G0030_RS11910 (G0030_11900) - 2522666..2522956 (+) 291 WP_163169943.1 antibiotic biosynthesis monooxygenase -
  G0030_RS11915 (G0030_11905) tonB2 2522953..2523831 (-) 879 WP_180006786.1 energy transducer TonB Machinery gene
  G0030_RS11920 (G0030_11910) - 2524071..2524754 (+) 684 WP_016659565.1 hypothetical protein -
  G0030_RS11925 (G0030_11915) - 2524908..2525621 (+) 714 WP_005182145.1 DUF3108 domain-containing protein -
  G0030_RS11930 (G0030_11920) - 2525711..2526286 (+) 576 WP_005182137.1 xanthine phosphoribosyltransferase -
  G0030_RS11935 (G0030_11925) - 2526504..2526884 (+) 381 WP_005182135.1 hypothetical protein -
  G0030_RS11940 (G0030_11930) - 2526942..2527124 (-) 183 WP_045796412.1 hypothetical protein -
  G0030_RS11945 (G0030_11935) wrbA 2527427..2528023 (-) 597 WP_104470746.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33098.80 Da        Isoelectric Point: 9.1971

>NTDB_id=422247 G0030_RS11915 WP_180006786.1 2522953..2523831(-) (tonB2) [Acinetobacter indicus strain Q186-3_T]
MLKKFHFAPLTQQWWKDPLFGTVLTLAALSHLAVLTVQFVMPQQSDAAVKEIAVSLRPSATEIKDADFLAQADQQGSGTF
REAHRMSSDMLAPMIEQSAGDQQLESLERLQQQRELSFEEKVLMTTLSWQKQAAENQRKKALEELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDVAAGYLERFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNANGGIRAIRLIE
SSGHTMLDEAAKASVRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 879 bp        

>NTDB_id=422247 G0030_RS11915 WP_180006786.1 2522953..2523831(-) (tonB2) [Acinetobacter indicus strain Q186-3_T]
ATGTTAAAGAAATTTCATTTTGCACCTTTGACGCAGCAGTGGTGGAAAGATCCACTATTTGGCACCGTACTGACGCTGGC
GGCACTTTCGCATCTGGCTGTGTTAACGGTGCAATTTGTCATGCCACAGCAAAGCGATGCCGCGGTCAAGGAAATTGCAG
TCAGCTTAAGACCAAGTGCCACCGAAATTAAGGATGCCGACTTTTTAGCACAGGCCGACCAGCAGGGTTCTGGCACCTTC
CGGGAAGCGCACCGCATGTCCAGCGATATGCTCGCACCAATGATTGAACAGAGTGCCGGTGATCAGCAGCTGGAAAGTCT
GGAGCGTTTGCAGCAGCAGCGTGAACTGAGCTTTGAAGAAAAAGTGCTAATGACCACCTTAAGCTGGCAAAAGCAGGCGG
CGGAAAACCAGCGTAAAAAAGCGCTGGAAGAATTAAACAGCCAGTTTCAGGCCAAAGCGGCGATGGTGGCCAGTCTGGAA
GCGCAGTATTTACAGCGTCAGCAAAATTTCAGCCGTCAGCAGAAAATTAAAACCGTAGATGGAATTCAGGCCAAGCAGGA
TGTCGCAGCCGGTTATCTGGAAAGATTCCGTCAGAAAGTCGAATTTTATGGTAACCGTTATTATCCGGAAGCGGCCAAGC
AGCAACAGTTGGCCGGTGAGGTGCGTTTAATGGTGATTTTAAATGCCAACGGTGGGATTCGTGCGATTCGTTTAATTGAA
AGCTCGGGGCATACCATGCTGGATGAAGCTGCCAAGGCTTCTGTGCGTAAAGCTGCTCCTTTTGGTGCCTTTGATGCCAA
GATGAAAGATATTTCCGAGCTACGCATTATCCGGACCTGGCGTTTTGACCCGGCTGAGGCGGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

75.627

95.548

0.723

Multiple sequence alignment